Xenopus laevis (African clawed frog): 443936
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Entry
443936 CDS
T01010
Symbol
ncbp1.L, cbp80, ncbp, ncbp1, ncbp1-a, ncbp1-b, sto1
Name
(RefSeq) nuclear cap-binding protein subunit 1-A
KO
K12882
nuclear cap-binding protein subunit 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
443936 (ncbp1.L)
09122 Translation
03013 Nucleocytoplasmic transport
443936 (ncbp1.L)
03015 mRNA surveillance pathway
443936 (ncbp1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
443936 (ncbp1.L)
03041 Spliceosome [BR:
xla03041
]
443936 (ncbp1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
443936 (ncbp1.L)
Spliceosome [BR:
xla03041
]
Common components
Common spliceosomal components
Cap binding complex
443936 (ncbp1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
DUF1690
DUF1664
Importin_rep_6
AAA_11
Motif
Other DBs
NCBI-GeneID:
443936
NCBI-ProteinID:
NP_001085510
Xenbase:
XB-GENE-5841293
UniProt:
Q6GQ80
A0A974I3T7
LinkDB
All DBs
Position
1L:117017523..117041636
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AA seq
791 aa
AA seq
DB search
MSRRRHSDENDGGQAHKRRKTSEPLEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKSKILRILCFVARLLPEKMSVYSTLVGLLNARNYNFGGEFVEAMIRHLKETIKLNA
YSEAVYLVRFLSDLVNCHVIAAPSMVAMFESFVGVTQEEDIPQVRSDWYVYAVLSSLPWV
GKELYEKKDVEMDRILSQIEAYLKQRQKLHVSILQVWSAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSVLCEALQHNLPPFTPPPHTEDSVYPVPRVVFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCILKSHWRERKTCAAQLLSYPEKNKIPLNYHIVEVIFGELF
QLPTPPHIDVMYTTLLIELCKLQPGSLPQVLAQASEMLYTRLDTMNTICIDRFINWFSHH
LSNFQFRWNWEDWADCLSQDLNKPKPQFVREVLEKCMRLSYHQRILDIVPATFSALYPAS
PSCVFKYGDESNSALPGYSVAVTLTNEIKNKASDKEIFNILKDIPNPNQDDDDDEGISFN
PLKIEVFVQSLLNLASKSFSHAFSALAKFHDIFKALSESDEGKLHILRVAYDVWKNHPQM
IAVLVDKMIRTQIVDCAAVANWIFSPELSHDFTRFYIWEILHSTIRKMNKHVQKIQKELE
ETKQRLAKQHKHRDSDDNDEDSGRKDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRFIM
ILTEHLVRCETGAIDVNTAWYKNCRERLQQIFLQHHQTIQQYMVTLENLLFTAELDHHIL
TVFQQFCALQS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaggaggcacagtgacgaaaatgatggaggacaagctcacaaaaggagaaaa
acctcagagccccttgagatcgaagacagattggaatccttgatatgcagagttggtgaa
aagagtacatcctcactggaaagcaacctagaaggtctggctggagttttggaagctgat
ctgcctaactacaaaagcaagatcttaagaattctttgttttgtggctcggttgctgcct
gaaaaaatgtcggtgtactctacattagttgggttgcttaatgccagaaactacaatttt
ggtggagaatttgtggaagccatgatacgacatctcaaagagacaattaaactgaatgct
tacagtgaggctgtatatttagtccgttttctttctgatcttgtaaattgccatgtgatc
gcagccccgtcaatggttgccatgtttgaaagctttgttggggtcactcaggaagaagat
attccccaggtgcgaagtgactggtatgtgtatgcagttctttcttcactgccatgggtc
ggaaaagaattgtatgagaaaaaagatgtcgagatggaccgcattttatcccaaattgag
gcttacctgaagcaacgtcaaaagctccatgtatctattctgcaagtatggtcagcagaa
aaaccacacccgcaggaagagtatttagactgcttgtgggcacaaatacagaagttaaaa
aaggaccgttggcaggaaagacacatcctgcgtccataccttgcctttgacagcgttttg
tgtgaagctctgcagcacaatcttccaccgtttacgccaccacctcatactgaagattct
gtgtacccagtgccaagagttgttttcaggatgtttgactacacagatgcacctgagggt
ccagtcatgcctggaagtcattctgtagagcgctttgttatagaagaaaatctgcattgt
atacttaaatcacattggcgcgaaaggaaaacctgtgctgctcaactgttaagctaccca
gagaagaacaaaattcccttgaattatcacatagttgaggtgatctttggagagctgttt
cagttaccaactcctccacatatcgatgtcatgtacactacacttctaattgaactttgc
aaactgcaacctggatcgttaccacaagttcttgcacaagcctctgaaatgttgtataca
cgcctggatacgatgaacacaatttgtattgacaggtttataaactggttttcacaccat
ctttcaaactttcaatttagatggaactgggaggactgggcagactgtctttctcaagac
ttgaataaaccaaaaccacaatttgttcgtgaagtgctagaaaaatgtatgaggctttcc
tatcaccagagaatattggacattgtacctgcaacattttctgcattatatccagccagt
ccctcctgtgtatttaaatatggtgatgagagtaacagtgctttgcctggatattctgtt
gctgtcactttgacaaatgaaattaaaaataaagcaagcgacaaagagatttttaacatt
ttaaaagatatccctaatcctaatcaagatgacgacgatgatgaaggaatcagctttaat
ccacttaaaattgaggtttttgtacaaagcctgcttaatctggcatcaaagtccttcagt
catgcctttagtgctcttgcaaagtttcatgacatctttaaagcattatctgagagtgat
gaagggaaacttcatattctaagagtcgcttatgacgtctggaaaaatcacccacagatg
attgctgtgttagtggataagatgatccgaacacaaattgttgactgtgcagcagtggca
aactggatcttctccccagagttatcacatgacttcaccaggttttatatttgggaaata
ttgcactctacaattcggaaaatgaataaacatgtccagaaaatccaaaaagagctggaa
gaaactaagcaaaggctagctaaacagcataaacatagagacagtgatgacaacgatgaa
gacagtggaagaaaagatggtcctttagaagaacaaattgagcgattgcaagagaaagtg
gagtccgctcagagtgaacaaaagaacttgttccttgtcattttccagaggtttatcatg
atacttacggaacacttagtacgctgtgaaactggagccattgatgtgaatactgcttgg
tataagaactgcagagagagacttcagcagatattcctacagcatcatcagacaatccag
cagtatatggtgactctggaaaacctcttgttcacagcagaactggaccatcacatcctg
accgtctttcagcagttttgtgcattacagtcttaa
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