Xenopus laevis (African clawed frog): 444032
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Entry
444032 CDS
T01010
Symbol
exosc2.S, exosc2, exosc2.L
Name
(RefSeq) exosome component 2 S homeolog
KO
K03679
exosome complex component RRP4
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
444032 (exosc2.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
444032 (exosc2.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
444032 (exosc2.S)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
444032 (exosc2.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
444032
NCBI-ProteinID:
NP_001085606
Xenbase:
XB-GENE-977778
UniProt:
Q6GPU7
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Position
8S:33935978..33946252
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AA seq
293 aa
AA seq
DB search
MAVEVRLPVAQKRVSEELGSQGGLHLVTPGDTISTDSGFMRGHGTYTEDDKLVASVAGVV
ERVNKLICVRALKARYNGEVGDIVVGRITEVQQKRWKVDTNSRLDSVLLLSAVNLPGGEL
RRRSAEDELAMRSYLQEGDLISAEVQAVYSDGALSLHTRSLKYGKLGQGLLVQVSPSLIK
RRKTHFHNLTCGASVILGNNGFIWLCPTPEETEEEAGGFITNLEPIALADREVISRLRNC
ILALASQKMLLYDTSILYCYEASLSHQIKELLKVEVMEDIVLETRQRLLELEG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggaagtacggctgccagtggcacaaaagcgagtcagcgaggagttgggatcg
cagggcggcctgcatctagtgacccccggggacaccatctccacggactcgggattcatg
aggggccatggaacttacacagaagatgataagctggtggcctcggtggctggtgtcgtc
gagagggtcaacaaactcatatgtgtccgagccctgaaagccaggtacaacggagaagtt
ggggatattgttgttggccgtattacagaggtgcaacagaagagatggaaggtggacact
aatagtcggttggattctgtgttacttctttctgctgttaatcttcctggtggggaactg
aggaggaggtcagccgaggacgagttggccatgcggagttacctgcaggagggagacctg
atcagtgcagaggtccaggctgtgtactcagatggagcattatccctgcacacaaggagc
cttaagtacggtaaactcgggcaggggttgctggtccaggtgtccccttcgctcatcaag
agacgtaagacgcacttccataacttgacttgcggggcctctgtcatcctggggaacaat
ggattcatctggctctgtcccacccctgaagagactgaggaagaggctgggggctttatc
accaacctagagcctatagcgttagccgatcgggaagtgatttctcgtctgaggaactgc
atcctggccttggcttctcagaagatgttactgtatgataccagcatcctctattgctat
gaagcttcattgtcccaccagatcaaagagttgttaaaggtggaggtgatggaagacata
gtcttggaaacccgacagcgcctcctggagctggaaggttaa
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