KEGG   Xenopus laevis (African clawed frog): 444032
Entry
444032            CDS       T01010                                 
Symbol
exosc2.S, exosc2, exosc2.L
Name
(RefSeq) exosome component 2 S homeolog
  KO
K03679  exosome complex component RRP4
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    444032 (exosc2.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    444032 (exosc2.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     444032 (exosc2.S)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     444032 (exosc2.S)
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 ECR1_N_2 RRP40_S1
Other DBs
NCBI-GeneID: 444032
NCBI-ProteinID: NP_001085606
Xenbase: XB-GENE-977778
UniProt: Q6GPU7
LinkDB
Position
8S:33935978..33946252
AA seq 293 aa
MAVEVRLPVAQKRVSEELGSQGGLHLVTPGDTISTDSGFMRGHGTYTEDDKLVASVAGVV
ERVNKLICVRALKARYNGEVGDIVVGRITEVQQKRWKVDTNSRLDSVLLLSAVNLPGGEL
RRRSAEDELAMRSYLQEGDLISAEVQAVYSDGALSLHTRSLKYGKLGQGLLVQVSPSLIK
RRKTHFHNLTCGASVILGNNGFIWLCPTPEETEEEAGGFITNLEPIALADREVISRLRNC
ILALASQKMLLYDTSILYCYEASLSHQIKELLKVEVMEDIVLETRQRLLELEG
NT seq 882 nt   +upstreamnt  +downstreamnt
atggctgtggaagtacggctgccagtggcacaaaagcgagtcagcgaggagttgggatcg
cagggcggcctgcatctagtgacccccggggacaccatctccacggactcgggattcatg
aggggccatggaacttacacagaagatgataagctggtggcctcggtggctggtgtcgtc
gagagggtcaacaaactcatatgtgtccgagccctgaaagccaggtacaacggagaagtt
ggggatattgttgttggccgtattacagaggtgcaacagaagagatggaaggtggacact
aatagtcggttggattctgtgttacttctttctgctgttaatcttcctggtggggaactg
aggaggaggtcagccgaggacgagttggccatgcggagttacctgcaggagggagacctg
atcagtgcagaggtccaggctgtgtactcagatggagcattatccctgcacacaaggagc
cttaagtacggtaaactcgggcaggggttgctggtccaggtgtccccttcgctcatcaag
agacgtaagacgcacttccataacttgacttgcggggcctctgtcatcctggggaacaat
ggattcatctggctctgtcccacccctgaagagactgaggaagaggctgggggctttatc
accaacctagagcctatagcgttagccgatcgggaagtgatttctcgtctgaggaactgc
atcctggccttggcttctcagaagatgttactgtatgataccagcatcctctattgctat
gaagcttcattgtcccaccagatcaaagagttgttaaaggtggaggtgatggaagacata
gtcttggaaacccgacagcgcctcctggagctggaaggttaa

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