Xenopus laevis (African clawed frog): 444071
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Entry
444071 CDS
T01010
Symbol
vps18.S, vps18
Name
(RefSeq) VPS18, CORVET/HOPS core subunit S homeolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04140
Autophagy - animal
xla04148
Efferocytosis
xla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
444071 (vps18.S)
04148 Efferocytosis
444071 (vps18.S)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
444071 (vps18.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
444071 (vps18.S)
Membrane trafficking [BR:
xla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
444071 (vps18.S)
Hops complex
444071 (vps18.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_16
zf-RING_2
zf-RING_Vps41
zf-C3HC4_2
zf_RING_Vps8
zf-RING_11
zf-RING_UBOX
zf-RING_5
Synaptonemal_3
zf-ANAPC11
Nup54_57_C
DUF2175
STX17_N
Motif
Other DBs
NCBI-GeneID:
444071
NCBI-ProteinID:
NP_001085645
Xenbase:
XB-GENE-1007591
UniProt:
Q6GPN4
LinkDB
All DBs
Position
8S:89488871..89521929
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AA seq
968 aa
AA seq
DB search
MASILEQYENDLSQASFPNQGRNPDIPLSGYVNARLEKETPIFNKQRIDFSPPENINSLV
VCSNQLCMSLGKDSILRIDLMKADQPNQVDLGRKDDFKVHRIFLDPTGSHLLIALNTSEC
LYLNRNAQKVRVLSRWRGHLVESIGWNKLLGNETSTGPILVGTAQGLIFEADISASEGGL
FSTNPDQYFRNIHTLEEETGPAPVCCLEINRGYENRFSVIATTPKRLFQFAAKIPEGTEQ
QGFTPLFNQPVDDLPSIQEFPGSLGYSEIAFYTQKLRSIPSSFAWMMGNGVLYGNLDFSR
PDSILTDVQVWEYPSSAEKPMSIVLTQFHFLLLLPDRIKAICILNGQVVFEDIFTEKFGP
LKKMLKDPNIGQIWIHTERAVFRYHVEREPRDVWKMYMSMGKFDLAKEFCRDRPECMDTV
LANEAEHCFQSKKYIESAKCYALTQKYFEEVALKFIEAKQEEALMEYLQKKLSNLKSSEK
IQVTLLTTWLTELYLNHLGILESDASKRSLYLKARDDFKSFLNSPKNKECLFNNRASIHD
LLASHGDTDHMVYFAVLMQDYERVVAHHCQHDDYNEALNVLSKYKDEKLFYKFSPVLMQH
IPTKVVDAWISMGKKLDPKNLIPALVNYSQSAGTQINEAIRYMEYCVYKMKETEQAIHNY
LLSLYAQFRSDSLLSYLEKAGTNTNRIHYDLKYALRLCAEHGHHRACVHVYKVMELYEEA
VDLALKVDVDLAKSCADLPVDDEELQKKLWLKIARHVVQEEKDVKKAMACLSSCHLLKIE
DILPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEDATLSAKRIREDMQEMRNKYGL
VDPQDKCTFCDFPLLNRPFYLFLCGHMFHYDCLMQVVVPNLPAYRQVKLEDLQQKLAAAV
QPPKSRSQAKEEDTINLAKIQQSREQIKADIDDIVAAECAYCGELMIRSIDKPFIDPQKY
KEEMLSWL
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgattttagagcagtatgagaatgacttgtcccaggctagcttcccgaaccag
ggccggaacccggatatcccgctgtctggttatgtgaatgctcgtctagagaaagaaaca
cccatatttaacaagcagaggattgatttcagccctccagagaatattaacagcctggtt
gtgtgtagcaatcaactatgtatgagcttgggaaaagactccattcttagaattgatttg
atgaaagcagatcagcccaatcaagtggacctagggcgaaaagatgatttcaaagttcat
aggattttcttggatcccacagggtctcacctcctgattgctctgaataccagcgaatgc
ctttatctgaatcgaaatgctcagaaagtgagagttctttctcgttggaggggccacttg
gttgaaagcattggatggaacaagcttttaggcaatgaaacaagcactgggccgatttta
gttgggactgctcagggtctgatatttgaggcagatatttccgccagtgaaggtggcctg
tttagcaccaaccctgaccagtacttccgaaacattcacacactggaggaagagacaggt
cctgccccagtttgctgtctggaaataaatcgaggttatgagaataggttttctgttatt
gcaaccactcccaaaaggctattccaatttgctgctaaaataccagagggaactgaacaa
caggggtttacgcctctttttaaccagcctgtagatgatcttcctagtatccaggagttt
ccaggaagtctcggttatagtgagattgccttttatactcagaagcttcgttctattccc
agttcctttgcttggatgatgggaaatggagtcctttatggcaacttagatttctctcgc
ccagactccatactaacagatgtgcaggtctgggagtatccatccagtgctgaaaagcct
atgtctattgtgctcactcagttccattttctgcttctgcttcctgataggataaaggca
atttgcatccttaatggccaagtggtttttgaagatatttttacagaaaagtttgggcca
ttgaaaaagatgttaaaagatcccaatataggtcagatatggattcatacagagagggca
gtatttcgataccatgtggagcgagagccgagagatgtttggaagatgtatatgagcatg
ggcaaatttgacttggcaaaggaattctgcagggatcggcctgaatgcatggacactgtg
ctagctaatgaggctgagcactgcttccagagcaagaagtatatagaaagtgccaagtgt
tatgccctcacgcaaaaatactttgaagaagtagctcttaaattcattgaagccaaacaa
gaagaagcacttatggagtatctgcagaagaaactgtccaacttgaaatcttcagagaaa
attcaagtcactttgctaacaacatggctgactgagctctatttaaatcacctcggtatt
ctagaaagcgacgcatcaaagagaagcctttatttgaaggcccgtgatgattttaagtca
tttctgaacagcccaaagaacaaagaatgcctcttcaacaaccgggcttcaatacatgat
ctcttagccagtcatggagatacagatcacatggtgtattttgccgttttaatgcaagat
tacgaaagagtggttgcccatcattgtcagcatgatgactataacgaagccctcaacgtc
ctatcaaagtacaaagatgagaaactgttttataaattctccccagtcctgatgcagcac
attccaaccaaggttgtagatgcctggatctcgatgggcaaaaaactggatcccaagaac
ctcattcctgctctggttaattacagtcagagtgcaggcactcagatcaacgaggcaata
agatacatggaatattgtgtttataagatgaaggaaaccgaacaagccatccacaactac
ttgctttctctttatgcccagttccgatccgattcacttctttcttacctggaaaaagca
ggaacaaacactaaccgaattcactacgatctgaagtatgcgctacgtctctgtgcagaa
cacgggcatcaccgggcctgtgtccatgtctacaaagttatggagctgtacgaggaggca
gtggacttggctttaaaggtggatgtggatctggcaaagtcttgtgcagatttaccagtg
gatgatgaggagcttcagaagaagttgtggctgaagattgctcgccatgtggttcaggag
gagaaggatgtaaaaaaagccatggcctgcttatccagctgccacctcctgaaaattgag
gatatcttgccattctttcctgactttgtaaccattgaccacttcaaggaggccatttgc
aactcccttgaagactacaacaaacacatcgaggagctgaagagggagatggaagatgcc
accctgagtgccaaacgtatccgggaggacatgcaagaaatgagaaacaagtacggtctg
gtggatccacaagacaagtgcacattctgtgactttccgctccttaaccgccccttctat
ctatttctttgtggtcacatgtttcactacgactgcctcatgcaggtcgtggtccccaac
ctgccggcgtacagacaggttaaactggaagaccttcagcagaagctggcagcagccgtg
caacctccgaagagccgctctcaggccaaggaggaggacactataaatctggccaaaatc
cagcaaagccgcgaacaaatcaaggcggatatcgacgacattgtggcagccgaatgcgcc
tattgtggtgaactcatgattcgctccattgacaagccgttcattgatccgcagaaatac
aaggaggagatgctttcctggctctag
DBGET
integrated database retrieval system
