Xenopus laevis (African clawed frog): 444278
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Entry
444278 CDS
T01010
Symbol
hbs1l.L, hbs1l
Name
(RefSeq) HBS1 like translational GTPase L homeolog
KO
K14416
elongation factor 1 alpha-like protein
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
444278 (hbs1l.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
444278 (hbs1l.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
444278 (hbs1l.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
444278
NCBI-ProteinID:
NP_001085851
Xenbase:
XB-GENE-944110
UniProt:
Q6GNS6
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All DBs
Position
5L:complement(74432443..74497941)
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AA seq
678 aa
AA seq
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MARHRNVRGYNYDDDFDDDDLYGQSVEDDYCISPATAAQFIYKRDRQTSFTEPLEEEEEG
EYEELDKLKATDSSLSAVDQARLYSCLDHMREVLGESVMEQVMIDAVLKCQFDVAKALDL
VFKQDCNKNIKPANQELISGKPTKGLARGLQAPEHEHEIVPKMAKMIVTGKKQTMGFDVP
SAASEINGQIVKGQTTDEAMEETDNGQESANPVPSFQNTEEPNSTMTPGKSSNKAKQKIN
VKEELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGHVNKRTMHKYEQESKKAGKAS
FAYAWVLDETGEERQRGVTMDVGMTKFETKSKVITLMDAPGHKDFIPNMITGAAQADVAV
LAVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQERFNEVISKLR
HFLKQAGFKESDVYYIPTSGLSGENLVKRSQISELVGWYKGPCLLEQIDSFKAPQRSIDK
PFRLCVSDVFKDQGSGFCVTGKIEAGFVQTGDRLLAMPPNETCTVKGITLHQEAVDWAAA
GDHVSLTLTGMDIIKINVGCVFCSPNEPIKGCTRFRARVLIFNFEVPITQGFPVLIHYQT
VIEPATIRKLVSVLHKSTGEVMKKKPKCLTKGMNAVIELQTQRPIAVELYKDFKELGRFM
LRYSGSSIAAGVVTEIKE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctaggcatcgcaatgtgcgtggatacaactacgacgatgactttgatgacgatgat
ctgtatggacagtctgttgaggatgactattgcatttccccagcaacagctgctcagttt
atatacaagcgggacaggcaaacaagttttacagaaccattagaagaagaagaggagggt
gaatatgaagaactcgataagctgaaagcaactgactcatctctaagtgctgtcgatcaa
gccagactctattcctgccttgaccatatgagagaagtcttgggagaatccgtgatggaa
caagttatgattgatgctgttttgaaatgtcagtttgatgtagccaaggctctagactta
gtatttaaacaagactgcaacaaaaacatcaaaccagccaatcaagaattaatttcaggg
aaaccaacaaaaggattggcaagaggattgcaggcccctgaacatgaacatgaaattgta
ccaaaaatggctaaaatgattgtcactggaaagaaacaaacaatgggatttgatgttccg
agtgcagcatcggaaataaatggtcagatcgtgaaaggccaaactacagatgaagcaatg
gaggagacagataatggccaggagtctgccaatccagttccttccttccaaaatacagaa
gaacccaactctacaatgacccctggcaaaagctccaacaaagcaaagcagaaaattaat
gtgaaggaagaactggagaaaaggcaaggaggaaaacaactgctaaaccttgttgtgatc
ggtcatgtcgatgctgggaaaagcacacttatgggccatctgttgtacctcctgggacac
gtgaacaaaagaactatgcacaaatatgagcaagagtccaaaaaggctgggaaagcatca
tttgcttatgcctgggtgctagatgagacaggagaagagaggcaaaggggtgtgacaatg
gatgtcggcatgaccaagtttgaaaccaagtctaaggttattacattgatggatgctcct
gggcataaagacttcatcccaaacatgattacaggagctgcacaggccgatgtggctgta
ttagctgttgatgccagccgaggagagtttgaagcaggctttgaagctggagggcaaaca
cgtgaacatgccttattggttcgatctcttggagttacccagttagctgttgctgtcaat
aaaatggatcaggttaactggcaacaagagagatttaatgaagtcatctctaaacttagg
cacttcttaaaacaagctggttttaaggaaagtgatgtatactacattcctacaagtggg
ctcagtggagaaaacttggttaaaaggagtcaaatcagtgaactagttggttggtacaag
gggccttgcctgctagagcagatcgattcctttaaagcaccacaacgctctatagacaaa
cccttcaggttatgcgtgtctgatgttttcaaagatcaaggctctggattttgtgtgact
ggtaagatagaagctggctttgtccaaactggtgaccgtttacttgctatgcctcccaat
gaaacttgcaccgtaaaaggaatcacattgcaccaagaggctgttgactgggcagcagca
ggggatcacgttagtctcactttaactggcatggatatcatcaaaatcaatgtcggttgt
gtattttgcagtccaaatgaacctataaaaggttgcactcgcttccgagcccgggttctc
atcttcaactttgaggttcctataacgcaaggttttcctgtgcttatacattatcaaact
gtgattgagcctgccactatcagaaagctggtcagtgtactacacaaaagtacaggagaa
gtgatgaagaaaaagccaaagtgtttgacaaagggaatgaatgcagtgatagaattacag
acacaaaggcctatagctgtggaattgtacaaagacttcaaagaactcggaaggttcatg
ttgcgctacagcggatcatctatagctgctggagttgttacagagataaaggaatga
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