Xenopus laevis (African clawed frog): 444555
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Entry
444555 CDS
T01010
Symbol
lsm7.L, GC83430, lsm7
Name
(RefSeq) LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated L homeolog
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
444555 (lsm7.L)
09123 Folding, sorting and degradation
03018 RNA degradation
444555 (lsm7.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
444555 (lsm7.L)
03041 Spliceosome [BR:
xla03041
]
444555 (lsm7.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
444555 (lsm7.L)
mRNA degradation factors
5'-3' decay
Lsm complex
444555 (lsm7.L)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
444555 (lsm7.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
444555
NCBI-ProteinID:
NP_001086126
Xenbase:
XB-GENE-1008127
UniProt:
Q6DKD2
A0A974DYM5
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All DBs
Position
1L:complement(99847875..99864142)
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AA seq
103 aa
AA seq
DB search
MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQQQEG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaagagaagaagaaaaaggaaagcattctagacctctccaaatacatagac
aagacaattcgagtaaagtttcagggtggaagagaagcaagtggagtgctgaaagggttt
gatccattgctgaatcttgtactggatggcacaatagaatacatgagagatccagatgac
cagtataaattaacagaggacacacggcagttggggctggtagtctgcagaggaacatct
gtagtactgatttgtccgcaggatggcatggaagcaatccctaacccttttgttcagcaa
caagagggttaa
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integrated database retrieval system
