Xenopus laevis (African clawed frog): 444808
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Entry
444808 CDS
T01010
Symbol
smg7.L, smg7
Name
(RefSeq) SMG7 nonsense mediated mRNA decay factor L homeolog
KO
K14409
protein SMG7
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
444808 (smg7.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
444808 (smg7.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
444808 (smg7.L)
mRNA cycle factors
Common to processing body (P body) and stress granule
444808 (smg7.L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
444808
NCBI-ProteinID:
NP_001086379
Xenbase:
XB-GENE-955260
UniProt:
Q6DJH9
A0A974D6P7
LinkDB
All DBs
Position
4L:complement(95571953..95621411)
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AA seq
1129 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTESKPGTAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISIKQMFSGTVVKPQSSSCAYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREEV
KNRWGISDFIKAFIKFHGHVYLTKNLEKVNTLREQLEEQFKNLLFQKALNSQQLVHITVI
NLFQLHHLRSFGTEADQQSFNSEEELCWSQLLALFMSFLGILCRFPLKTHHCEEISCANP
LPAIKVSLDWMKLRPSVFQESAVEEKKYVWPWLISLLNSFHVLDEDVSSANMLPLPEEFE
LQGFLALRPAFRNLDFSRGHQAITGVRDAQHRQLRPIRLVAVGKWISENQPWLMQYRTVG
GELLFITDIPELLTEDMDETEDGSFLQESNQIETQKTEGSPGLKSVLSTGRSLSCDTNEK
PVVTFKENIKPQEINRDVPSRSYTRSGNVCKDQRDYNKSLNNVVNKKDNNNKRKNDPKKI
CVEKTVEPGKQSIAVQVKSPVSESRKTAVTTTSSPSSNTQFIPIHHPGAFPPLPSRPGFP
PPAYVIPPPVAFSMSSGFSFPTGVNVPGSFLQPSSHSPSGNQGPPGKPSHIPYSQQRPSG
PVTPNQLTGQIQPQAPSSSPTQSTSQTAAQLQIQALAQQQSPTKPMQSIPKHHPSLQQYQ
QVDASKQVWNTSQVPNALGKMVPMKQSYYMDGRLPTDPVNMLEQCLQQQQPLEKKMTSFP
MEAYGQSPSDVKMPEFYWSDPPSYNLNDNRALLAQQSVNNQRSKRQPAGYRSGQDPMTRM
PFESLLEKPSELISQPPSFLSLSGFSLSQERFQNNSMFNEVYGKSTCASIKPEACQAMGQ
QETSLYSLFEGKPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHTSQPFSNFGPI
GTPDNRDRRGTDRWKADKPVSAMGGFGLDYLSMTPSSENSWRQANNSSSANAWATQGNTR
EDSSAALMESLKSIWSTTMMHPGPSALEQLLMQQKEKQQRGQGSLNPPH
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgtgcgcagtatctcaggcaggctgaagtcctgaaagcagatatgaca
gaatccaaacctggtacagcagaggtgtggacttctcgtcaggctctacaagatttgtac
cagaagatgctggtgacagaccttgagtatgcactggacaagaaggtggaacaggatctc
tggaatcatgccttcaaaaatcagattacgacattgcaagggcaagccaagaaccgagct
aatccaaatcgcagtgaggtacaggccaatttgtcactgttcctcgaggcagctagtggc
ttctatacacagcttttgcaggagctttgcactgtgtttaacgtggatctgccatgtcgt
gtgaaatcctcccagctgggcattataagcattaagcagatgttttctgggacagttgtg
aagcctcaatccagttcctgtgcttatatctgtcagcattgcctggttcatcttggagac
attgctcgctataggaaccagacaagccaggctgaatcctattacagacatgctgctcaa
cttgtcccttccaatggtcagccgtataatcagctggctattctcgcctcttcaaaaggg
gaccatttgaccactatattctactactgccgcagcatcgctgtcaagtttcctttccca
gcagcctccaccaatttgcagaaggccctttccaaagccttggaaagtcgtgaagaggtg
aaaaatcgctggggtatatcagactttataaaggccttcataaagttccatggacatgtg
tacttgacaaagaacttagagaaagtaaacactctgcgggaacagctggaagaacagttt
aagaatttgctttttcagaaggcactaaactcccagcagctggttcatatcacagtgatc
aacctgtttcagctacaccatctgcgaagctttggcactgaggcagatcaacagagtttt
aacagtgaagaggagctatgctggtcacaacttttggctctctttatgtcgttcttgggc
atcctctgccggtttcccttaaagacccatcactgtgaggaaatctcctgtgccaaccca
ctaccagctatcaaggtgtcattagactggatgaagctgcgccccagtgtcttccaagag
agcgcggttgaggaaaaaaaatatgtatggccatggctcatttcccttctgaatagtttc
cacgtgctggatgaagatgtctctagtgctaacatgctgcctctcccagaagagtttgag
ctgcaaggattcctggcacttcgacctgcttttagaaacctagatttctctagaggacac
caagccatcactggagttagagatgctcagcaccggcagctaagaccaatacgacttgtg
gccgttggaaaatggatctctgagaatcagccttggttgatgcaatatcgtactgttggg
ggtgagctattgttcattactgacatacctgagcttttgactgaagacatggatgagaca
gaggacggatctttcctgcaagagtccaaccaaatagagactcaaaaaactgaaggaagc
ccaggtttaaaatctgtattatccactggccgaagcctaagctgtgacacaaatgaaaaa
ccagtggttacttttaaagaaaatattaagccacaagagataaaccgggatgtaccatca
cgcagctacactagatcagggaatgtctgcaaggatcagagagactataacaaaagttta
aataatgttgtaaacaaaaaagacaataataacaaacgaaagaatgaccctaagaaaatt
tgtgttgagaagactgtagaacctgggaagcaaagcattgcagttcaggtgaaatctcca
gtctctgaatcaagaaaaacagcagtgactacaacatccagtccaagcagtaacacacag
ttcatccctatacatcatcctggtgctttcccgcctcttcccagccggccaggttttccc
ccaccagcatatgttataccacctcctgtggcattttccatgagctctggcttttccttt
cctactggtgttaatgtgccagggtctttcctgcagccttcatctcattcaccatctggg
aaccagggtcctcctgggaaaccgtcccacattccttacagtcagcagcgcccctctggt
ccagtgactcctaaccagttaactggccaaatccaaccacaggctccatccagttcacca
acccagtccacgagtcagactgcagcgcaattacagatccaagctcttgctcagcagcag
tctccgactaaacccatgcaatccattcccaagcatcacccatctcttcagcagtaccaa
caggtggatgcatcaaagcaggtctggaatacttctcaggtccccaacgcactgggaaag
atggtacctatgaaacaatcgtattacatggatggccgtttgccaacagatcctgtaaat
atgctggagcagtgtctacaacagcagcagcctctggaaaagaagatgacctcttttccc
atggaagcctatggtcagagtccttctgatgtgaaaatgccagaattctactggagtgac
ccaccatcttacaacttaaatgacaacagggctctcttggcacaacaatctgtaaataac
caaaggagcaaacgccagcccgcaggctaccgatctggccaagatccaatgactagaatg
ccatttgagtctctcctggaaaagccatctgaactgatatcccagcccccctctttcctc
tcactctctggattttcactaagccaggaacggttccagaataacagcatgtttaatgag
gtgtatggaaaatccacgtgtgcaagcataaagcccgaggcatgccaagcaatgggacaa
caggagacctccctgtactctctctttgagggtaaaccatggtcgccatcccttcccgca
agctcagatcactctacgccagccagtcagtcacctcattcttcaaatccaagcagccta
cccagctctcctcccacccacaatcatacctcccagcccttctctaactttggtcctatt
ggcactccagataacagagatcgtcggggaactgaccgctggaaggctgacaagccagtt
tcagcaatgggtggatttgggctggactacttatctatgactccatcttctgagaatagc
tggcgccaagctaataattcaagtagcgctaatgcttgggctactcaaggtaacaccaga
gaggactcttcagctgctcttatggaaagtttaaagtccatttggtcaaccacaatgatg
catcctggaccttctgccttggaacaacttttgatgcagcagaaggagaagcagcagcga
gggcagggatcactgaaccctccgcactga
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integrated database retrieval system
