Xenopus laevis (African clawed frog): 444830
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Entry
444830 CDS
T01010
Symbol
nudt21.L, cpsf5, nudt21
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
444830 (nudt21.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
444830 (nudt21.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
444830 (nudt21.L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
444830
NCBI-ProteinID:
NP_001086401
Xenbase:
XB-GENE-921424
UniProt:
Q6DJE4
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Position
4L:44036670..44046798
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AA seq
227 aa
AA seq
DB search
MSVLPPNRSQTGWPRGVNQFGNKYLQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
LKRLMTEILGRQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgttgcctccaaatcgttcccagaccggatggccccgtggggtgaatcaattc
gggaacaagtacctccaacaaaccaagcctctgaccctggagagaaccatcaacctgtat
ccccttacaaattacacttttggtaccaaagagcctttgtatgaaaaagacagttcagtg
gctgcaaggttccagcgcatgcgtgaggagtttgataagatcggaatgagacgcactgta
gaaggggttcttattgtacatgaacacagattgcctcacgtccttttactgcaactgggc
accaccttcttcaaactgcctggaggagaactcaatccaggagaggatgaggttgaaggt
ttgaaacgtttaatgacagaaatccttggccgtcaagatggagttcagcaggactgggtt
attgatgactgtattggaaattggtggaggcctaactttgaacctcctcagtatccatac
attcctgctcatattacaaaacctaaagaacacaagaaattgttcctagttcagttgcaa
gagaaagcgctgtttgctgtcccaaaaaattacaaacttgttgcggcccctttgtttgaa
ttgtacgacaatgctcctggatatggccccatcatttcaagtctcccacagcttcttagc
aggtttaattttatttacaactga
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