Xenopus laevis (African clawed frog): 445838
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Entry
445838 CDS
T01010
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04137
Mitophagy - animal
xla04140
Autophagy - animal
xla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
445838
04137 Mitophagy - animal
445838
04148 Efferocytosis
445838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
445838
Transcription factors [BR:
xla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
445838
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
445838
NCBI-ProteinID:
XP_018087504
UniProt:
A0A1L8F054
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Position
8S:8174116..8210290
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AA seq
800 aa
AA seq
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MEGSVVVSEKKRISSERRKEKSRDAARCRRSKESEVFYELSHELPLPHNVSSHLDKASIM
RLAISYLRLRRLLDAGDLDGETDLDKQLNCFYLKALEGFVLVLTEEGDMIYLSENVNKCM
GLTQFELTGHSVFDFTHPCDHEELREMLTFRNGPAKKGKEQITERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHMRVYDNANNQKHCGYKKPPMKCMVVICEPIPHPSNIEFPLDSK
TFLSRHSLDMKFSYCDERVTELVGYDPDELLGRSVYEYYHALDSDHLTKAHHNMFTKGQV
TTGQYRMLAKKGGYVWVETQATVIYNSKNSQPQCIVCVNYVLSEVVEKDLILSLGQTACV
LIPAESQEMKMPEIFTDLSEENNDECLFDKLKQEPESLTALAPDAGDDIIPLDFSSGDSD
KPYEDVPLYNDVMLHSTSKKLESTPVTPLPASEMLKPLRSNVDPALNREVVIKMESNPEQ
LELAFTIPQLSKPGSPSDIGSSQSSTEPSSPPEYCFNVDGEIASEFKLDLVEKLFAIDTE
VKAPFTTQETDLDLEMLAPYIPMDDDFQLRTFDQLSSLECDSSNPQTFQSMSALFQSIST
SDFKPEDAMNDLKTIIQSPVHVMKESTSAPASPYNGNRSRTSSPVRPAKAVMDTTEKSRP
GTPNLPVQLNKRCAVLDEELNPKMIALHNVQRKRKMESDGPLFQAIGIGSLFQTNVDPGP
NSSLLWKRVKGSDSDRPSSAEQRTMLLLSTDMSSQLIRQSLDGTGLPQLTGYDCEVNAPV
HGNRNLLQGEDLLRALDQAN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcagttgtagtgagcgagaagaaaaggatcagctctgagcggcgtaaagaa
aaatcacgtgatgctgccaggtgtcggaggagtaaggagtcggaggttttttatgaacta
tctcacgagttgcctctaccgcacaatgtcagctcacaccttgacaaggcctctatcatg
agactcgccatcagttacctgcggttgagaaggttgcttgacgcaggggatttggatggg
gagacggatttggacaagcaactgaattgtttctatttgaaggctctggaagggtttgtc
ttggttctaactgaagagggggatatgatttatctatctgaaaatgtcaacaagtgtatg
ggcctcacacagtttgagcttactggacacagtgtgtttgatttcactcatccttgcgat
catgaagagctaagggagatgctgactttcagaaatgggccagcaaaaaaaggaaaagaa
caaatcacagagcgaagtttcttccttcgtatgaagtgcacgttaactagtcgtgggaga
acagtgaatataaagtcagccacatggaaggtacttcactgtacaggacacatgcgtgta
tatgataatgcaaacaaccagaagcattgtggctacaagaagcctcccatgaagtgcatg
gttgtaatctgtgaaccaattcctcatccatcaaatattgagttccccttggatagcaag
accttcctcagtcgccacagccttgacatgaagttttcctactgtgatgaaagggtaact
gaattagtaggatatgacccagatgaacttttgggacgttctgtctatgaatattatcat
gccttggactctgatcatttgaccaaagctcatcataatatgttcacaaagggacaggtg
actactgggcagtacagaatgcttgcaaagaaaggcggttatgtctgggttgaaacacaa
gccactgttatatacaattctaagaactcccaaccacagtgcattgtttgtgtaaactat
gtactcagtgaggtggtggagaaagatttgatcttgtccctgggccagacagcatgtgtt
ttgattccagcggaatcccaagagatgaagatgccagaaatcttcacagacctgagcgag
gagaacaatgacgagtgcttgtttgataaactgaagcaggagccggaatctcttacagct
cttgcgcccgatgctggggatgacattattccactggatttcagttcaggtgattctgac
aagccatatgaagatgttccactttacaatgatgtaatgcttcactctaccagtaagaaa
ctggaaagtacacccgtcactcctctcccagcctcagaaatgctaaagcctttgcggagc
aatgttgaccctgcacttaaccgggaagttgtgataaagatggaatcaaatccagaacaa
cttgagctggcgttcaccattccacaactatccaagccaggcagcccttcggatatcggt
tccagtcagagctcaacagagcctagttcacctccagaatattgcttcaatgtcgacggt
gaaattgcaagtgagttcaagctggatttggtggaaaaattgtttgcaatagatacagaa
gtaaaagcaccttttactacccaggaaactgatttagacttggagatgttggcaccatat
attcctatggatgatgatttccagttgcgaacctttgaccaactttcatctttggaatgt
gattcatcaaatccacaaaccttccagagcatgagcgctctatttcagtctatatccacc
agtgatttcaagcctgaggatgccatgaacgatcttaaaaccattattcagtcacctgtt
catgtgatgaaagagtccactagtgctccagcatctccatacaatggaaacagaagccgc
acaagttcaccagtaaggccagccaaagcagtgatggatacaactgaaaaatcacgtcca
ggaactccaaatttacctgttcagttaaataaaaggtgtgccgtattggatgaagaactg
aatccaaagatgattgcgttacacaatgtacagagaaaacgtaaaatggaaagcgatggc
ccacttttccaggctattggaattggtagcctcttccaaacaaatgttgatcctgggcca
aactcatctctcctatggaaacgtgtaaaaggatccgactcggacaggcccagtagtgca
gagcaaagaacaatgctcttgctgtcaacagatatgtcaagtcagttgattagacagtct
ttggatggaactggtcttcctcagctgactggctatgactgcgaggtgaatgcccctgtt
catggcaacagaaacttgctccaaggtgaagatctactacgagctctagatcaagctaac
tga
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