Xenopus laevis (African clawed frog): 446486
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Entry
446486 CDS
T01010
Symbol
cnot10.L, cnot10, cnot10-a, cnot10-b
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-A
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
446486 (cnot10.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
446486 (cnot10.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
446486 (cnot10.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_14
TPR_2
TPR_19
TPR_12
TPR_8
TPR_7
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
446486
NCBI-ProteinID:
NP_001086651
Xenbase:
XB-GENE-6256689
UniProt:
Q6DE97
LinkDB
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Position
6L:52307751..52379054
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AA seq
748 aa
AA seq
DB search
MAADKAGEQGAEKHEDSANCSGISDHEKELSRSALQAFTAGNYEACLQHLGELKEINKDD
YKVILNSAVAEFYKSDQTTTDLLKQTLNQLRNEVHSAIDEIDSLDDVENSMLYYNQAVIL
YYLRQHMEAISIGEKLYQFIEPFKEKFAHAVCFLLVDLYLLTFQTEKALHLLVVLEKMIL
QGHSNNKNGKNNETNSNANNREPFAQRGDGGVHVEAAKSKIHQYKVRAYIQMKSLKACKR
EIKSVMNTSGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEYPGFMKTGECVRCMFWN
NLGCIHFAMGKHNLGLFYFKKALQENDNTCAQLPSSNTDPGKKFSSRPMCTLLTNKRYEL
LYNCGIQLLHIGRPLAAFEYLIEAVQVYHSNPRLWLRLAECCIAANKGTSEQETKGLPSK
KGIVQSIVGQGYHRKIVLASQSVQNLLYNDGESSAIPVASMEFAAICLRNALLLLPEDQF
DAKQENGSKTSSQTGNTDSGGESSEVCSNKSHEGDKFIPAPPSSPLKRQEVENLRCSVLA
CSAYVGLALGDNLMALNHAEKLLQQPRLSGSLKFLGHLYAAEALISLDRISDAITHLNPE
NVTDVSLGVSSNEQEQGSDKGENEPMESVGKQMPQCYPSSVTSARTMMLFNLGSAYCLRS
EYDKARKCLHQAASMIHPKEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSIRMMSD
LRKKPLFQTMHQPMQPIQMPAFTAVQRK
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacaaagcaggagaacagggagctgaaaaacatgaggactctgctaattgc
tcaggcatatctgaccatgagaaggaattatcaagaagtgcattacaggcatttacagct
ggtaattatgaagcctgtctacagcatctaggagaacttaaagaaatcaacaaagatgat
tataaagtaatcctgaactctgctgtagctgagttttataagagtgaccaaacaacaact
gacctgttgaagcaaacacttaaccagttaaggaatgaggttcattctgctattgatgaa
attgatagcttagatgacgtggagaacagtatgttgtattacaatcaagctgtcatcttg
tattatctgcgtcagcacatggaagccatttcaattggagagaaactttatcagtttatt
gaaccatttaaagagaaatttgcgcatgccgtatgctttctgcttgtagatttatatctt
ctgacattccaaacggaaaaagccttgcatctgttggtggttcttgaaaaaatgatttta
caggggcacagcaataataaaaatggtaaaaataatgagacaaacagcaatgctaacaat
agagaaccctttgcccagaggggtgatggcggagttcatgtagaagcagcaaaatctaaa
attcatcagtataaggtgagagcctacattcaaatgaagtctctaaaagcatgtaagagg
gaaataaagtctgtgatgaacacatctggaaattcggctccatctctgtttctgaaaagt
aattttgaatacctccgaggcaattaccgaaaagcagtaaagctcttgaattcatcaaat
attgctgaatatcctggattcatgaaaacaggggaatgtgtgagatgtatgttctggaat
aatcttggttgcattcattttgctatgggaaagcacaacttaggtcttttctacttcaaa
aaggctctccaagaaaacgataatacatgtgcacagttaccttccagtaatacagatcca
gggaagaaattttccagcagacctatgtgtaccctgttgaccaacaaacgatatgaactg
ctgtataattgcggaattcagcttttgcatattggaagacctcttgcagcttttgagtat
ttgatagaagccgtccaagtatatcattcaaaccctcggctctggttaagactagcagag
tgttgcatagctgctaacaaaggtacttcagaacaagaaacaaaagggcttccaagcaag
aaagggatagtacagtccattgtaggccaaggctatcaccggaaaattgttctagcttct
cagtcagttcagaatcttctctacaatgatggcgagtcatcagctattcctgttgccagc
atggagtttgcagcaatatgtctgagaaatgcattgcttcttttacccgaagaccagttt
gatgcaaagcaagagaacggttcaaagactagtagtcagacaggcaatacagactccggt
ggagagagcagtgaagtgtgcagtaataaaagccatgagggagataaattcattccagct
ccaccttcctctcccctgaagaggcaagaagtagaaaacctaaggtgttctgttcttgct
tgcagtgcctatgttggtcttgctttgggtgataacctcatggcactaaaccatgcagaa
aaacttctacaacagccacggttgtcaggatcccttaagttcctgggccatttatatgca
gctgaagctctcatctccttggacaggatttcggatgccatcactcatctgaaccctgag
aatgtcacagatgtgtctctaggggtctcttccaatgagcaggagcaaggttctgacaaa
ggagaaaatgagcccatggaatctgttggtaaacagatgccacagtgttacccaagttca
gtcacttctgctcgaacaatgatgctgtttaatctcgggagtgcttactgtttacgtagc
gaatatgacaaagcacgcaagtgtctacaccaggctgcctccatgatccaccctaaagaa
atcccaccagaggcaatcctgcttgcggtgtatctggagctacagaatggcaacacccag
ctggccttgcagatcatcaaaagaaaccagctcctcccgtccatcagaatgatgtcagat
cttcgaaagaagccattattccagacaatgcatcagccaatgcagccaattcagatgccg
gcttttactgctgttcagagaaaatga
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