KEGG   Xenopus laevis (African clawed frog): 446580
Entry
446580            CDS       T01010                                 
Symbol
cpsf6.S, cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
  KO
K14398  cleavage and polyadenylation specificity factor subunit 6/7
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03015  mRNA surveillance pathway
xla03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    446580 (cpsf6.S)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    446580 (cpsf6.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    446580 (cpsf6.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     446580 (cpsf6.S)
SSDB
Motif
Pfam: RRM_1 PRP38_assoc
Other DBs
NCBI-GeneID: 446580
NCBI-ProteinID: NP_001086745
Xenbase: XB-GENE-961710
UniProt: Q6DDW4
LinkDB
Position
3S:89005278..89030018
AA seq 548 aa
MADGVDHIDIYADVGEEFNQEAEYGAHDQIELYEDVLSPSANNGDAPEDRDYMDNLAASV
GDDVVKGSVPNIVYTYTGKRIALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRAN
GQSKGFALICVSSESSSKKLMDLLPKREMHGQKPIVTPCNKQFLSQFEMQSRKTATQAGQ
MSGEGKAGPPGINARLPFPPGGRGRGRFPTSGPGGDRFPGPAGPGGPPPPFSAGMTPPRP
PMCPPGPPGPPGPPPPGQPLPPPLPGPPNRGERPPPPVMFPGQPYGQPSIVTLPPGPPPP
GYGPPPGPPPPQQGPPPPPGAFPPRPPGPPMALGPPPHLPGPPPGGPPPAPHVNPNFFPP
PGNAGMTSSDSRGPPPSDPYGRPPPYERGDYGPPGRDMDVVRTPLSEAEFEEIMNRNRAI
SSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKS
YGSGSRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRERDRDRERD
REREYRHR
NT seq 1647 nt   +upstreamnt  +downstreamnt
atggcggacggagtggatcatatcgatatctacgcagatgtgggcgaggagtttaaccag
gaggcagaatatggtgcacatgatcagattgaactttatgaagatgttctctcaccatct
gcaaacaatggagatgctccagaggacagagactacatggataatctagcagcctctgtt
ggagatgatgtagtgaaaggatccgttcctaatattgtgtatacctatactggaaaaaga
atagcactgtacattggaaatctaacatggtggacaactgatgaagacttgacagatgct
gtgcattctttgggtgttaatgatattttggaaataaaattttttgaaaatcgtgccaat
ggccagtcaaaggggttcgctctaatatgtgttagttcagaatcctcatcaaaaaagctt
atggatcttttgccaaaaagagagatgcatggccagaagccaatagttacaccttgcaac
aagcaattccttagtcagtttgaaatgcagtcaaggaaaacagctacacaggctggccaa
atgtctggagaaggaaaagccggtccccctggcatcaatgctcgtttaccatttccaccg
ggtggcagagggaggggccgcttcccaacttcaggtcctggtggtgacaggttccctgga
cctgctggacctggagggcctccaccacctttttcagcaggaatgaccccaccaagacct
cctatgtgccctccaggtccaccaggaccccctggcccgcctccacctggacaacctctt
cctcctcctttgcctggacctccaaatcgtggtgaacgccctcctcctcctgttatgttt
cctggacaaccttatggtcaaccgtccatagtcacactcccacctggtccacctcctcct
ggttatggtcctccacctggtccacctccaccacaacaaggcccaccccctcctccaggt
gctttccctccacgtcctccaggtcctcctatggcacttggccctcctcctcacttacca
ggaccacctccaggtggaccaccaccagctccacatgtgaatccaaacttctttccccca
cccggtaatgctggtatgacttcttcagatagtcggggacctccaccatccgatccatat
ggtcgaccgcctccgtatgaaagaggagactatggcccaccaggaagggatatggacgtt
gtccgaacgcctttaagtgaggcagagtttgaagaaataatgaacagaaacagagcaatt
tcaagcagtgccatctcaagagcagtctctgatgccagtgctggtgactatggaagtgct
attgaaactttggtcactgcaatttctttgataaaacagtctaaagtttcagcagatgat
cgttgcaaagttctgattagttccttgcaggattgccttcatggaattgaatcaaagtct
tatggttcaggatccagaagacgtgagcgttcaagggaaagggaccacagtaggtcaaga
gaaaagagcaggcgtcataaatcccgtagtagagatcgtcatgatgactactatcgggaa
agaagtcgggagagggagagacaccgggatagagagcgggatcgcgacagggagagggac
agagagagagagtatcgtcatcgctaa

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