Xenopus laevis (African clawed frog): 446580
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Entry
446580 CDS
T01010
Symbol
cpsf6.S, cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
xla03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
446580 (cpsf6.S)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
446580 (cpsf6.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
446580 (cpsf6.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
446580 (cpsf6.S)
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GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
446580
NCBI-ProteinID:
NP_001086745
Xenbase:
XB-GENE-961710
UniProt:
Q6DDW4
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Position
3S:89005278..89030018
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AA seq
548 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGAHDQIELYEDVLSPSANNGDAPEDRDYMDNLAASV
GDDVVKGSVPNIVYTYTGKRIALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRAN
GQSKGFALICVSSESSSKKLMDLLPKREMHGQKPIVTPCNKQFLSQFEMQSRKTATQAGQ
MSGEGKAGPPGINARLPFPPGGRGRGRFPTSGPGGDRFPGPAGPGGPPPPFSAGMTPPRP
PMCPPGPPGPPGPPPPGQPLPPPLPGPPNRGERPPPPVMFPGQPYGQPSIVTLPPGPPPP
GYGPPPGPPPPQQGPPPPPGAFPPRPPGPPMALGPPPHLPGPPPGGPPPAPHVNPNFFPP
PGNAGMTSSDSRGPPPSDPYGRPPPYERGDYGPPGRDMDVVRTPLSEAEFEEIMNRNRAI
SSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKS
YGSGSRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRERDRDRERD
REREYRHR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggagtggatcatatcgatatctacgcagatgtgggcgaggagtttaaccag
gaggcagaatatggtgcacatgatcagattgaactttatgaagatgttctctcaccatct
gcaaacaatggagatgctccagaggacagagactacatggataatctagcagcctctgtt
ggagatgatgtagtgaaaggatccgttcctaatattgtgtatacctatactggaaaaaga
atagcactgtacattggaaatctaacatggtggacaactgatgaagacttgacagatgct
gtgcattctttgggtgttaatgatattttggaaataaaattttttgaaaatcgtgccaat
ggccagtcaaaggggttcgctctaatatgtgttagttcagaatcctcatcaaaaaagctt
atggatcttttgccaaaaagagagatgcatggccagaagccaatagttacaccttgcaac
aagcaattccttagtcagtttgaaatgcagtcaaggaaaacagctacacaggctggccaa
atgtctggagaaggaaaagccggtccccctggcatcaatgctcgtttaccatttccaccg
ggtggcagagggaggggccgcttcccaacttcaggtcctggtggtgacaggttccctgga
cctgctggacctggagggcctccaccacctttttcagcaggaatgaccccaccaagacct
cctatgtgccctccaggtccaccaggaccccctggcccgcctccacctggacaacctctt
cctcctcctttgcctggacctccaaatcgtggtgaacgccctcctcctcctgttatgttt
cctggacaaccttatggtcaaccgtccatagtcacactcccacctggtccacctcctcct
ggttatggtcctccacctggtccacctccaccacaacaaggcccaccccctcctccaggt
gctttccctccacgtcctccaggtcctcctatggcacttggccctcctcctcacttacca
ggaccacctccaggtggaccaccaccagctccacatgtgaatccaaacttctttccccca
cccggtaatgctggtatgacttcttcagatagtcggggacctccaccatccgatccatat
ggtcgaccgcctccgtatgaaagaggagactatggcccaccaggaagggatatggacgtt
gtccgaacgcctttaagtgaggcagagtttgaagaaataatgaacagaaacagagcaatt
tcaagcagtgccatctcaagagcagtctctgatgccagtgctggtgactatggaagtgct
attgaaactttggtcactgcaatttctttgataaaacagtctaaagtttcagcagatgat
cgttgcaaagttctgattagttccttgcaggattgccttcatggaattgaatcaaagtct
tatggttcaggatccagaagacgtgagcgttcaagggaaagggaccacagtaggtcaaga
gaaaagagcaggcgtcataaatcccgtagtagagatcgtcatgatgactactatcgggaa
agaagtcgggagagggagagacaccgggatagagagcgggatcgcgacagggagagggac
agagagagagagtatcgtcatcgctaa
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