Xenopus laevis (African clawed frog): 446667
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Entry
446667 CDS
T01010
Symbol
cstf3.S, cstf3, cstf3a
Name
(RefSeq) cleavage stimulation factor, 3' pre-RNA, subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
446667 (cstf3.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
446667 (cstf3.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
446667 (cstf3.S)
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Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_16
TPR_19
TPR_6
VapC50_C
Motif
Other DBs
NCBI-GeneID:
446667
NCBI-ProteinID:
NP_001086832
Xenbase:
XB-GENE-980302
UniProt:
Q6DDM9
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Position
4S:10686099..10748623
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AA seq
718 aa
AA seq
DB search
MASGEVPAEQAAEYVPEKVKKAEKKLEDNPYDLDAWSILIREAQNQPIDKARKTYERLVA
QFPSSGRFWKLYIEAEVKAKNYDKVEKLFQRCLMKVLHIDLWKCYVSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYNKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNTPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKT
HSIYNRLLSIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDPRTRHHVYVTAALME
YYCSKDTSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE
KSGEIWARFLAFESNIGDLASILKVEKRRYTAFKEEYEGKETALLVDRYKFMDLYPCSTS
ELKALGYKDVSRAKLTALIPDPVVAPSIAPSQKDDADRKPEYPKPDTSQMIPFQPRHLAP
PGLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDEILEILRRCKLPDTVEEAARII
TGSQAEMNSEGNGPVEVNAILNKSVKRPNEDSDDEEEKGSVVPPVHDIYRTRQQKRIR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctggagaagtcccagctgagcaagctgctgaatatgttccggaaaaggtgaag
aaagcggaaaagaaattggaagacaatccgtatgaccttgatgcttggagcattctcatt
cgcgaggcacagaatcagcctatagacaaagcacggaagacgtatgagcgacttgttgcc
cagttccccagctctggcagattctggaaactttacattgaagcagaggtaaaagctaaa
aattatgacaaagttgaaaagctgtttcagcggtgcctcatgaaagtcttgcacatagat
ctgtggaaatgctacgtgtcctatgtgcgagaaaccaaagggaaactgccaagttacaag
gagaaaatggcacaggcttacgacttcgctcttgataaaattggcatggaaatcatgtcc
tatcagatatgggtcgactacatcaatttcctgaaaggagtagaagcggtgggatcgtat
gccgagaaccaaaggattacagctgtccgcagagtctaccagcgaggctgcgtcaacccc
atgattaacattgaacagctctggagggattacaacaagtatgaagagggcatcaacgtc
catctggcaaagaaaatgattgaagacagaagcagagattacatgaatgcaagaagagtc
gcaaaggaatatgaaaccgtgatgaaaggtctggatcgcaatgctccttcggtgccgcct
caaaacaccccccaggaagcacagcaagtggaaatgtggaagaaatacatacagtgggag
aagagtaaccctctgcgaacagaggaccagaccctaataacaaaaagagttatgtttgca
tatgagcagtgtttgttggtgctgggacatcatccggacatctggtatgaagctgcacaa
taccttgaacaatctagcaagctgcttgctgaaaagggggacatgaacaacgctaaactt
ttcagtgatgaagctgccaacatctatgaacgtgccatcagcacacttctaaagaaaaac
atgttgctgtattttgcctatgcagactacgaagagagccgaatgaagtatgaaaaaaca
cacagcatatacaacagattactctccattgaagatatagatcctaccttggtttatatc
cagtacatgaaatttgccaggagagcagagggcatcaaatctgggagaatgattttcaaa
aaagccagggaagaccctaggacccgacatcatgtttacgtcaccgctgctttaatggaa
tattactgtagcaaggatacatcggtggccttcaagattttcgagttagggctaaagaaa
tatggtgacatccccgaatatgttctcgcctacatagactacttgtctcaccttaatgag
gacaataacacaagagtattatttgaacgagttttaacctctgggagtttgcctcccgaa
aaatcaggtgagatctgggcacgctttctggccttcgaaagtaatattggagatttagcg
agtatactgaaagtggagaaaaggagatacacggcattcaaggaggagtacgaagggaag
gagacggcgctgcttgtggatagatacaagtttatggatttgtacccctgctccacaagt
gaactgaaagctttgggatacaaggatgtatcaagagccaaactgacagcactaatccca
gaccccgtggtagcgccatcaatagcgccttctcagaaggatgatgctgaccgaaaacca
gagtaccccaaacccgacacaagtcagatgatccctttccagccgcgacatttagctcca
cctggactccatcctgttcctggtggtgtattcccagtccccccagctgcagtggtctta
atgaagctgcttcctccccctatttgcttccagggcccgtttgtgcaggttgacgagatc
ctggaaatcttgcggaggtgcaagctgcccgacacagtggaagaggcagcgaggatcatt
actggaagccaggcggagatgaactcggagggtaacggaccagtcgaagtcaacgcaata
ctaaataaatcggtgaaaagacccaatgaggactcggacgatgaggaagagaagggctca
gtggtccctcccgtccatgacatatacagaacccggcagcagaagagaatccggtga
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