KEGG   Xenopus laevis (African clawed frog): 446736
Entry
446736            CDS       T01010                                 
Symbol
exosc1.L, exosc1
Name
(RefSeq) exosome component 1 L homeolog
  KO
K07573  exosome complex component CSL4
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    446736 (exosc1.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    446736 (exosc1.L)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     446736 (exosc1.L)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     446736 (exosc1.L)
SSDB
Motif
Pfam: EXOSC1 ECR1_N GULLO2-like_3rd RRP4_S1
Other DBs
NCBI-GeneID: 446736
NCBI-ProteinID: NP_001086901
Xenbase: XB-GENE-6255361
UniProt: Q6DDE4 A0A974CEE7
LinkDB
Position
7L:28790969..28797658
AA seq 194 aa
MAPVRCSVPGERLCSTEDCAPGYGTFCRHGYIFASLAGYIVKKSDNGLMPIISVVRDTDS
HLLPDVGSVVTCKVTSINSRFAKVQIMYIGSTPLRNTFRGTIRKEDIRATEKDKVEVYKS
FRPGDIVMAKVISLGDIQSNYLLSTAENELGVVVAHSEAGATMVPISWCEMQCPKTHIKE
QRKVARVQPEFLQT
NT seq 585 nt   +upstreamnt  +downstreamnt
atggctcctgtgaggtgtagtgtgccgggtgagagactgtgcagcactgaagactgtgct
cctggctatggcactttctgcagacatggctatatttttgcctccctggcaggttacata
gtgaagaaaagtgacaatggcttgatgccaatcatttctgtggtgagggacactgattca
catcttctgccagatgtgggttctgttgtcacttgtaaggtaacaagcattaactccagg
tttgcaaaggtccaaattatgtatattggttcaactccgctgagaaatacattccgaggc
acaatcaggaaagaagacattcgtgctacagaaaaagacaaggttgaagtctacaaaagc
tttcggccaggagatatcgttatggccaaagtgatatctttgggtgacatccagtcaaat
tatctattaagcacagcagagaatgagctgggagttgttgttgctcacagtgaagcagga
gcgactatggtgccaatcagctggtgtgagatgcagtgtccaaagacgcacattaaagaa
cagaggaaagttgcacgggtgcagccagagtttctgcagacgtag

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