Xenopus laevis (African clawed frog): 446785
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Entry
446785 CDS
T01010
Symbol
rbm39.L, rbm39, rnpc2
Name
(RefSeq) RNA binding motif protein 39 L homeolog
KO
K13091
RNA-binding protein 23/39
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
446785 (rbm39.L)
Spliceosome [BR:
xla03041
]
Common components
Common spliceosomal components
General mRNP proteins
446785 (rbm39.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
RBD_DEAH11
RRM_7
POP1_C
RSRP
Motif
Other DBs
NCBI-GeneID:
446785
NCBI-ProteinID:
NP_001086950
Xenbase:
XB-GENE-492230
UniProt:
Q6DD16
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All DBs
Position
9_10L:43933898..43955028
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AA seq
540 aa
AA seq
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MADDIDIEAMLEAPYQKDENKLSSANGHEERSKKRKKSKSRSRSRERKRSKSKERKRSRD
RERKRSKSREKKRSRSRERRKSRSRSRDRRFRGHYRSSYSGPKFGGSGRGKIGIPHGVKL
RRRSKSKSPPKKDKSPVRGPIDNLSPEERDSRTVFCMQLAARIRPRDLEEFFSTVGKVRD
VRMISDRNSRRSKGIAYVEFLDQSSVPLAIGLTGQKVLGVPIIVQASQAEKNRAAALANN
LQKGTAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS
ECAKKALEQLNGFELAGRPMKVGHVTERTDASNASSFLDSDELERTGIDLGTTGRLQLMA
RLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRISQQSEALAAAAAAASAASITLASA
TLPIPATTQPIATQCFQLSNMFNPQTEDELGWDSEIKEDVIEECNKHGGVVHLYVDKNSA
QGNVYVKCPTIASAIAAVNALHGRWFAGKMITAAYVPLPTYHSLFPDSMTSTQPLFPSRR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgacattgacatagaagcgatgctggaagctccttaccaaaaggatgagaac
aagttgagcagtgccaatggacacgaagaacgcagcaagaagagaaaaaaaagtaaaagt
aggagccgcagtcgtgaaaggaaacgcagcaagagtaaggaacgtaaacgcagccgtgat
cgggaaagaaagagaagtaaaagccgtgaaaagaaacgcagccggagtagggaacggcga
aaaagccgttccagaagcagagatcgacggttcagaggccactacaggagctcttattct
ggaccaaagtttggtggctctgggcgtggcaagataggaatacctcatggcgtgaagtta
aggagaaggtcaaagagcaaaagtcctccgaagaaagacaaaagccctgtaaggggtccg
atagataatctgtctcctgaagaaagagattcacgcactgtgttctgtatgcagctggct
gctaggattcgtccaagagatttggaagaattcttctcaacagtaggcaaagtccgtgat
gtgcgaatgatttcagacagaaattccagacgctctaaaggcattgcttatgtggaattt
ctggatcagagctctgtgcctcttgcgatcggccttacaggccagaaagttttaggagtc
ccaataatagtacaggcttcacaggcagaaaaaaacagagcagctgcattggccaataat
ctccagaaaggcactgctgggcccatgcgcttgtatgtaggatcattacactttaacata
acagaagacatgcttcgtgggatatttgagccttttggcagaattgaaagtattcagctt
atgatggacagtgagactggtcgctctaaaggatatggttttattactttctcagattct
gaatgtgccaaaaaagctttggagcagttgaatgggtttgagctggctggtcggccaatg
aaagttggccatgtcacagagcgaactgatgcgtccaatgcaagctcatttcttgacagt
gatgagctggaaaggacaggaattgaccttggaactactggccgccttcagctaatggct
aggcttgcagagggcactggcttgcagatccctccagcagcacaacaagctctacagatg
agtggctcgttagcttttggagcagtagcagacctccagacaagaatttcccagcagagt
gaagcactggctgctgctgctgcagccgcatctgcagcttccattactttggcatcagcc
acgctacctatccccgcaactactcagcccattgctacacaatgcttccagctttccaac
atgtttaacccacaaactgaggatgagctaggttgggactctgaaattaaagaggacgtc
attgaagaatgcaataaacacgggggagtcgttcatctttatgtagacaaaaattcagct
cagggcaatgtctatgtcaaatgtccaaccattgcatctgcgattgctgctgttaatgct
ctgcacggaaggtggtttgctggtaagatgatcacagctgcctatgtacctctcccaact
taccacagcttgttccctgattccatgacctcaactcagcctctgtttccttctcgtcga
tga
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