KEGG   Xenopus laevis (African clawed frog): 447126
Entry
447126            CDS       T01010                                 
Symbol
sem1.S, dss1, ecd, sem1, shfd1, shfdg1, shfm1, shfm1.S, shsf1
Name
(RefSeq) split hand/foot malformation (ectrodactyly) type 1
  KO
K10881  26 proteasome complex subunit DSS1
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03050  Proteasome
xla03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    447126 (sem1.S)
  09124 Replication and repair
   03440 Homologous recombination
    447126 (sem1.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    447126 (sem1.S)
   04131 Membrane trafficking [BR:xla04131]
    447126 (sem1.S)
   03051 Proteasome [BR:xla03051]
    447126 (sem1.S)
   03400 DNA repair and recombination proteins [BR:xla03400]
    447126 (sem1.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     447126 (sem1.S)
Membrane trafficking [BR:xla04131]
 Exocytosis
  Tethering complex
   Exocyst complex assembly proteins
    447126 (sem1.S)
Proteasome [BR:xla03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     447126 (sem1.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     447126 (sem1.S)
SSDB
Motif
Pfam: DSS1_SEM1
Other DBs
NCBI-GeneID: 447126
NCBI-ProteinID: NP_001078914
Xenbase: XB-GENE-1016356
UniProt: A0A974CMS6 Q66KW8
LinkDB
Position
6S:complement(26745644..26749127)
AA seq 71 aa
MSSDKKPPVDLGLLEEDDEFEEFPTEDWTGFDEDEDTHVWEDNWDDDNVEDDFSNQLRAE
LEKHGYKMETS
NT seq 216 nt   +upstreamnt  +downstreamnt
atgtcgtctgataagaagccaccggttgatttgggtcttttggaagaggacgatgagttc
gaagagtttcccaccgaagactggacgggtttcgatgaagatgaagatacacatgtctgg
gaagataactgggatgatgacaatgtagaagatgatttttcaaatcagttaagggctgaa
ttagagaaacacggatacaagatggagacatcatag

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