Xenopus laevis (African clawed frog): 447260
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Entry
447260 CDS
T01010
Symbol
ndc1.S, ndc1, tmem48
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
447260 (ndc1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
447260 (ndc1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
447260 (ndc1.S)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
447260
NCBI-ProteinID:
NP_001087436
Xenbase:
XB-GENE-5736383
UniProt:
Q6AX31
A0A974HM69
Structure
PDB
PDBj
LinkDB
All DBs
Position
4S:complement(77221327..77243801)
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AA seq
660 aa
AA seq
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MTMLGERLVLRWRVAASFAWSVILMPVCCALFIVLSRIQILHPIQWLTDSISDLTSSYTI
FCLLLICAILGLQCTFLMEYYTVVPSIPCSRLALIGNLLLPHRILHSLAHVAMGVLASWC
YAVLSKGKYQLLVVSCTLQSEDEADKPSHCLNESHLFQLLCGAFFGYSYSLQYFVHNMNY
LSFPSIQQYKYLQFRRFLPLIIKQSVFQSLYFIRSYAILYFCLGNIPRTWIQTALNLHMD
RQQPSLDTLRGFLNLSLFYQIWLSGTFLLATWYMVWILFRIYTTEARIFPVQTSFAEEAE
KCLPFILNSNTLPLVKYLAMQDLVLLSQYSPSRRQEVFSLSQPGGHPHNWTSISKECLNL
MSSLTSRLIAHQEAAANNGRMRVPSSPKQIRKSSSSSGTSLIEDSAEQTQNLSTIPRIGI
PSLLKTASLKSSLDIGSPFATPGVKQMSESLDPNTPCHGSVQSPQVTRRGAKLWTSDSDV
QKNGSEVSPVMHRPVCNGAKQGILHTWFQHKLVQIKNVLSKRGLIMYLFSKHPEASSQDV
FADAQIHIWALEALSHLVAASFSEDRMGVVQTSLSSVLAILLTLQEAVEKHFKLPHASSK
PARNPGSLLDSSCKTLRFSLRAALKTAIYRITTTFGEHLHAVPVSSEHKKKLQQFLDFKE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgctcggagagagactggttctcagatggagagtggccgccagctttgcttgg
tcagtgatactcatgcctgtgtgctgtgctctctttattgtcctcagtcggatacaaata
ttacatcccatacagtggcttacagattctatcagtgaccttaccagcagttacacaatc
ttctgcctattactgatatgtgccattttgggactgcaatgtacttttcttatggagtat
tacacagtggtgccttctattccatgctctcggctggccctcattggaaaccttctcctt
ccgcatcgtatcctgcactctttagctcatgttgccatgggggtgctggcttcatggtgc
tatgcggtcttgagtaaagggaaatatcagcttctagttgtttcctgcactttacagagt
gaggatgaagcagacaagccttctcattgccttaatgagagccatctcttccaattgctg
tgtggtgcattctttggctatagttacagcctccagtattttgttcacaacatgaactac
ttgtccttcccatctatacagcaatacaagtatctgcagtttagaagatttctaccactt
attattaaacagagcgttttccagtctctctacttcattcgcagctacgccattctctac
ttttgccttggcaacattccacgaacatggattcaaactgcactaaaccttcacatggac
aggcagcagccctcacttgatacattaaggggatttttgaatttgtcattattttaccag
atatggctgtctggcacttttttgcttgctacttggtacatggtctggattctcttcaga
atttatacaacagaggcccgtattttccctgtacagacttcctttgcagaggaagcagaa
aaatgccttccgttcattttgaatagtaacacacttccacttgtaaagtatttggccatg
caagatcttgtgttgctctctcagtattcaccatctagaagacaggaagtgtttagtctg
agccagccaggtgggcatccccacaactggacctcaatatccaaagaatgtttgaactta
atgagcagtttgacatccagattaattgctcatcaggaagctgctgcaaataatggtcga
atgagagttccatcttcccctaaacagattaggaagtcgtcaagcagctcaggtacatct
cttattgaagactctgctgagcaaacacagaacttaagtaccattcctagaataggtatc
ccctctctactaaagaccgcatctctaaaatcctcattggatattggaagcccatttgca
acccctggagtcaaacaaatgtctgaatccctggacccaaatactccatgccatggctct
gtccaaagtccccaggtcacaagaaggggtgctaagttgtggacttcagattctgatgtt
cagaaaaatggctctgaggtttccccagtaatgcataggcctgtgtgtaatggtgcaaaa
cagggaatactccatacgtggttccagcataagcttgttcaaatcaagaacgtcttgtca
aagagaggtctcattatgtacctgtttagtaagcatccagaggcttctagtcaggatgta
tttgcagatgcacagatccatatttgggcactggaagcattatctcatcttgtggctgct
tccttctcagaagatagaatgggagtagtacagacttccctttccagtgtacttgcaatt
ttacttacgttgcaggaggctgtggaaaaacattttaaactcccccatgcatccagtaaa
ccagccagaaaccctggtagtttactggactcttcctgcaagacactgaggttttcactt
cgagccgctctgaaaacagcaatctacaggataaccacaacctttggagaacacttacat
gcagttcctgtctcatctgagcataagaaaaaacttcagcaattccttgacttcaaagaa
taa
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