Xenopus laevis (African clawed frog): 447476
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Entry
447476 CDS
T01010
Symbol
prpf4.L, prpf4
Name
(RefSeq) pre-mRNA processing factor 4 L homeolog
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
447476 (prpf4.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
447476 (prpf4.L)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
447476 (prpf4.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
PRP4
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
447476
NCBI-ProteinID:
NP_001087652
Xenbase:
XB-GENE-6077684
UniProt:
Q66J65
A0A974C5J2
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Position
8L:complement(1685556..1692828)
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AA seq
483 aa
AA seq
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MSDDEGPPVVKRSRIFYGSLADKEKERLAKGEAPLGRTAVRAGIDAGNINISGGESFDLE
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNV
LSVVGTDALKKTKKDEEKSKKSTDEYQQTWYHEGPNSLKMARLWLAHYSLPRALKRLQAA
RENRSIPESTRTSQKQEVNKSLQSLNNFCSQIGDDRPLSFCHFSPNSKMLATACWSGLCK
LWSVPDCNPIRTLRGHNTNVGAIVFHPKATLSLEEKDVNLASCAADGSVKLWNLESDEPV
ADIEGHSVRVARVSWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKEVYDIDFHSD
GSLAATGGLDAFGRVWDLRTGRCIMFLEGHLKEIYSVNFSPNGHQWELPADRRLRQHGQS
VDTPPVGAIKDSRWPRRESHGTGHFIRRRTNRHLFLRQNLQAVGGRVLISPPTVTLQGVQ
IIE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgagggtccccctgtggtgaaaaggtcccgcatattctatggcagcctg
gcagataaagagaaggagcgtctggccaagggagaggccccgctgggaaggactgcggtc
agggcaggaattgatgctggaaatattaacattagcggaggggagtcgtttgacttggag
gagcacatcagtgagaggcaggcggaggtcctcgcagagtttgagcgcagaaagcgtgcg
cgtcagataaacgtctccactgatgactcagaggtgaaggcgtgtctccgagcccttggg
gagcccattacgctctttggggaggggccagcggaaaggagagagcgcctgaggaatgtg
ctgtcagtggtgggcacagacgccttgaagaaaacaaagaaagacgaagaaaagagcaag
aaatcgactgacgagtatcagcaaacctggtatcatgagggccccaattccctgaaaatg
gctcgtctgtggctcgcacactactctctccctcgggccctgaagcggctgcaggctgca
cgagagaatcggagtatcccagaatccaccagaacttcccagaaacaggaagtgaataaa
tcactgcagtccctgaacaatttctgcagccaaatcggagacgaccggccgctgtccttc
tgccacttcagtccgaactccaagatgttggccacggcctgctggagtggactttgcaag
ttatggtcggtgccagactgcaacccgatccgaaccctaagagggcacaacacaaatgtg
ggtgccatagtgttccacccaaaggccacactctcattggaagagaaggatgtgaatttg
gcttcctgtgcagctgatggctccgtcaaactgtggaacctggagagcgatgagcccgtg
gctgatattgaagggcactctgtgagggtggcgcgagtatcttggcatccttctggaagg
ttcctgggcaccacttgttatgatcattcctggagactgtgggacctggaagcccaagag
gaaattctgcaccaggagggacacagcaaagaggtgtacgacatagacttccattcagat
gggtcactggctgccaccgggggcctcgatgcctttggcagagtttgggatctgcgcact
ggccgctgcattatgttcctggaggggcacctcaaggaaatctactccgtcaacttctcc
cccaacggccaccagtgggaattacctgctgaccggcgcctacgacaacacggccaaagt
gtggacacaccccctgtgggcgccattaaagactctcgctggccacgaagggaaagtcat
gggactggacatttcatcagacggagaactaatcgccacctgttcctacgacagaacctt
caagctgtgggcggccgagtcctaatatcaccccccacagtgactcttcagggtgttcag
ataattgaatga
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