Xenopus laevis (African clawed frog): 447521
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Entry
447521 CDS
T01010
Symbol
cdc40.S, cdc40
Name
(RefSeq) cell division cycle 40 S homeolog
KO
K12816
pre-mRNA-processing factor 17
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
447521 (cdc40.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
447521 (cdc40.S)
Spliceosome [BR:
xla03041
]
Complex C
Other components
Step II factors
447521 (cdc40.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
447521
NCBI-ProteinID:
NP_001087697
Xenbase:
XB-GENE-954568
UniProt:
Q642R4
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All DBs
Position
5S:complement(64078589..64122399)
Genome browser
AA seq
567 aa
AA seq
DB search
MAALTSLVSYSSGSEADSESDSEDCSAHLKVLPPGTGVLRVVDSAPEVVVKEDVETGHHL
DPYVKEVQFNPTYETMFAPEFGPNNPFKTQQMAAPRNMLSGFAEPTHINDFMFEQQRRTF
ATYGYALDPSIDNRETSTKYIGSVDEAEKNQGLTVFESTQKKSDKRKKVKGSDASNIDGF
LGPWAKYIDEKDVAKPSEEEQKELDEITAKRQKRGKQEEDKPAEEKTILHVKEMYDYQGR
SYLHIPQDIDVNLRSSELPEKCYLPKKQIHVWSGHTKGVSAVRLFPDSGHLLLSCSMDCK
IKLWEVYKDRRCLRTFIGHSKAVRDICFNNAGTQFLSAAYDRYLKLWDTETGQCISRFTN
KKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDVRSGEIVQEYDRHLGAVNTITFVDENRR
FVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQN
RFRLNKKKIFKGHMVAGYACQVDFSPDMNYVVSGDADGKLNIWDWKTTKLYSRLKAHDKV
CISAVWHPHETSKVITCGWDGLIKLWD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcttacatccttagtatcgtacagcagtggttcagaggctgatagtgagtcc
gatagtgaagattgcagcgcacatttaaaagttttacccccaggaacaggagttttaaga
gttgtggactcagcaccggaggtagtggtcaaggaagatgtggagactggacatcacctt
gatccttatgtcaaagaggttcaatttaatcctacctatgagacaatgtttgcaccagag
tttggccccaacaatccgttcaaaacacagcagatggctgctcctaggaacatgctctca
ggatttgctgaaccaacgcatattaacgatttcatgtttgaacaacagagaagaacattt
gcaacatatggttatgcactagatccttccatagacaatcgggaaaccagcactaagtat
attggatctgttgatgaagcagaaaagaatcaaggtttaacagtatttgaatccacacag
aagaaatctgacaaaaggaagaaagtaaaaggaagcgatgcctcaaacatagacggtttt
cttggcccttgggcaaaatatattgatgaaaaggatgttgcaaaaccttcagaggaagag
cagaaggagttggacgaaataacagcgaaaaggcagaagaggggaaaacaggaggaggat
aagcctgcagaagagaagaccattttacatgttaaagaaatgtacgactatcaaggaaga
tcttatcttcatattcctcaagatatcgatgttaacttgcgatcatcagaactcccagaa
aagtgctaccttccaaagaaacagatacacgtctggtctgggcatactaagggtgtcagt
gctgtgcggttgtttccagattctggccatttgctgctatcttgttccatggactgcaag
attaagctctgggaggtgtacaaagaccgaagatgcttacgcacatttatagggcacagt
aaagctgtgagagacatatgtttcaacaatgctgggacacaattcttaagtgctgcttat
gaccggtatctcaagctgtgggacacagaaacaggacagtgtatttctaggtttacaaat
aaaaaagtcccatactgtgtaaaattcaatcctgatgaagataaacagaatctatttgtg
gctggaatgtctgataagaagattgtgcagtgggatgttcgaagtggagagatagtccag
gagtatgacaggcatctgggggctgtcaacaccatcacatttgtggatgagaataggcgt
tttgtgagcacctctgatgacaaaagcttgagggtgtgggagtgggacattcctgtggat
tttaagtacatagcagagccaagcatgcactccatgcctgctgtcaccttatcaccaaat
ggtaaatggctagcctgtcagtccatggacaaccagattttaatatttggagctcaaaac
cgattcagactgaataaaaagaaaatcttcaagggccatatggtggcagggtatgcctgt
caagttgacttttctccagatatgaactatgtagtgtctggagatgccgatggaaagctg
aacatctgggactggaagacaactaaactgtacagcagactgaaagcacatgataaagtt
tgcataagtgctgtttggcaccctcacgaaacatccaaagtaataacatgtggatgggat
ggccttatcaaactatgggactaa
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integrated database retrieval system
