KEGG   Xenopus laevis (African clawed frog): 447521
Entry
447521            CDS       T01010                                 
Symbol
cdc40.S, cdc40
Name
(RefSeq) cell division cycle 40 S homeolog
  KO
K12816  pre-mRNA-processing factor 17
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    447521 (cdc40.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    447521 (cdc40.S)
Spliceosome [BR:xla03041]
 Complex C
  Other components
   Step II factors
    447521 (cdc40.S)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR3_2nd WDR55 WD40_Gbeta EIF3I WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd DSE1_N Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_WDR75_1st WD40_RFWD3 ASA1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF4 PAC11 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_NOL10_N Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_VPS8 WDR90_beta-prop_4th CFAP251_N Beta-prop_ACSF4 Beta-prop_NWD2_C TRM82_WD UCP007778 WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_Vps41 YJR039W_M
Other DBs
NCBI-GeneID: 447521
NCBI-ProteinID: NP_001087697
Xenbase: XB-GENE-954568
UniProt: Q642R4
LinkDB
Position
5S:complement(64078589..64122399)
AA seq 567 aa
MAALTSLVSYSSGSEADSESDSEDCSAHLKVLPPGTGVLRVVDSAPEVVVKEDVETGHHL
DPYVKEVQFNPTYETMFAPEFGPNNPFKTQQMAAPRNMLSGFAEPTHINDFMFEQQRRTF
ATYGYALDPSIDNRETSTKYIGSVDEAEKNQGLTVFESTQKKSDKRKKVKGSDASNIDGF
LGPWAKYIDEKDVAKPSEEEQKELDEITAKRQKRGKQEEDKPAEEKTILHVKEMYDYQGR
SYLHIPQDIDVNLRSSELPEKCYLPKKQIHVWSGHTKGVSAVRLFPDSGHLLLSCSMDCK
IKLWEVYKDRRCLRTFIGHSKAVRDICFNNAGTQFLSAAYDRYLKLWDTETGQCISRFTN
KKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDVRSGEIVQEYDRHLGAVNTITFVDENRR
FVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQN
RFRLNKKKIFKGHMVAGYACQVDFSPDMNYVVSGDADGKLNIWDWKTTKLYSRLKAHDKV
CISAVWHPHETSKVITCGWDGLIKLWD
NT seq 1704 nt   +upstreamnt  +downstreamnt
atggcggctcttacatccttagtatcgtacagcagtggttcagaggctgatagtgagtcc
gatagtgaagattgcagcgcacatttaaaagttttacccccaggaacaggagttttaaga
gttgtggactcagcaccggaggtagtggtcaaggaagatgtggagactggacatcacctt
gatccttatgtcaaagaggttcaatttaatcctacctatgagacaatgtttgcaccagag
tttggccccaacaatccgttcaaaacacagcagatggctgctcctaggaacatgctctca
ggatttgctgaaccaacgcatattaacgatttcatgtttgaacaacagagaagaacattt
gcaacatatggttatgcactagatccttccatagacaatcgggaaaccagcactaagtat
attggatctgttgatgaagcagaaaagaatcaaggtttaacagtatttgaatccacacag
aagaaatctgacaaaaggaagaaagtaaaaggaagcgatgcctcaaacatagacggtttt
cttggcccttgggcaaaatatattgatgaaaaggatgttgcaaaaccttcagaggaagag
cagaaggagttggacgaaataacagcgaaaaggcagaagaggggaaaacaggaggaggat
aagcctgcagaagagaagaccattttacatgttaaagaaatgtacgactatcaaggaaga
tcttatcttcatattcctcaagatatcgatgttaacttgcgatcatcagaactcccagaa
aagtgctaccttccaaagaaacagatacacgtctggtctgggcatactaagggtgtcagt
gctgtgcggttgtttccagattctggccatttgctgctatcttgttccatggactgcaag
attaagctctgggaggtgtacaaagaccgaagatgcttacgcacatttatagggcacagt
aaagctgtgagagacatatgtttcaacaatgctgggacacaattcttaagtgctgcttat
gaccggtatctcaagctgtgggacacagaaacaggacagtgtatttctaggtttacaaat
aaaaaagtcccatactgtgtaaaattcaatcctgatgaagataaacagaatctatttgtg
gctggaatgtctgataagaagattgtgcagtgggatgttcgaagtggagagatagtccag
gagtatgacaggcatctgggggctgtcaacaccatcacatttgtggatgagaataggcgt
tttgtgagcacctctgatgacaaaagcttgagggtgtgggagtgggacattcctgtggat
tttaagtacatagcagagccaagcatgcactccatgcctgctgtcaccttatcaccaaat
ggtaaatggctagcctgtcagtccatggacaaccagattttaatatttggagctcaaaac
cgattcagactgaataaaaagaaaatcttcaagggccatatggtggcagggtatgcctgt
caagttgacttttctccagatatgaactatgtagtgtctggagatgccgatggaaagctg
aacatctgggactggaagacaactaaactgtacagcagactgaaagcacatgataaagtt
tgcataagtgctgtttggcaccctcacgaaacatccaaagtaataacatgtggatgggat
ggccttatcaaactatgggactaa

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