Xenopus laevis (African clawed frog): 447706
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Entry
447706 CDS
T01010
Symbol
ddx39b.L, bat1, ddx39b, uap56
Name
(RefSeq) DEAD-box helicase 39B L homeolog
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
447706 (ddx39b.L)
09122 Translation
03013 Nucleocytoplasmic transport
447706 (ddx39b.L)
03015 mRNA surveillance pathway
447706 (ddx39b.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
447706 (ddx39b.L)
03041 Spliceosome [BR:
xla03041
]
447706 (ddx39b.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
447706 (ddx39b.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
447706 (ddx39b.L)
Spliceosome [BR:
xla03041
]
Complex C
Other components
EJC/TREX
447706 (ddx39b.L)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
447706 (ddx39b.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
447706
NCBI-ProteinID:
NP_001087845
Xenbase:
XB-GENE-865168
UniProt:
Q641G9
A0A974H7X4
LinkDB
All DBs
Position
8L:complement(65805220..65823049)
Genome browser
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDDVDNQAGVDAPDITVKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEVLKKSCPHIVVGTPGRMLALA
RNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMSQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagacagatgtggacaatgaacttctggactatgaagatgatgatgtggacaac
caggctggagtggatgctcctgacataactgtcaaaaaggaaatgaagggatcatatgta
tccatccacagctctggttttcgagactttttactcaagccggagttgcttcgggccatt
gtagattgtggctttgaacatccatcagaagtgcaacatgaatgcattcctcaggcaatt
cttgggatggacattctttgtcaagcaaaatctggcatgggtaaaacagcagtgtttgtg
ttagccacattgcaacagctggaacctgttactgggcaggtctctgtgttagtcatgtgt
cacacaagagagctggcttttcaaatcagcaaggagtacgagagattctcaaaatatatg
ccttctgttaaggtagcagtattttttggagggcttgccattaagaaagatgaggaggtt
ctgaaaaagagctgtccccacatcgtggtgggaaccccggggcgaatgctggcacttgca
agaaacaagactcttaatctcaaacacatcaaacatttcatccttgatgagtgtgacaaa
atgttagaacagctagacatgcgcagagatgtacaggaaattttccgcatgactccacat
gagaagcaggttatgatgttcagtgccacgctgagcaaggagattcgcccggtttgccgg
aaatttatgcaagatccaatggaaatcttcgtggatgatgaaacaaagttgacgcttcat
ggactgcagcagtattacgtcaagctgaaggacaacgagaaaaatcgtaaactgttcgac
ctgttggatctcttggagttcaaccaggtggtgatctttgtgaaatcagtccagcgctgc
atcgctcttgctcagctactagtggaacagaactttccagccatagccattcaccgtggg
atgtcacaagaggaaaggctttcacgctatcagcaatttaaggattttcagaggcgaatt
ttagttgcgactaacctgtttggtcgtggaatggacatcgagagggttaacattgctttc
aactacgatatgccagaggactctgatacatacctgcacagggtggccagagcaggcaga
tttggcacaaagggtttggccattacatttgtctctgatgagggggatgcgaaaattctc
aatgaagttcaagatcgttttgaagttaatattagtgagctacctgatgaaatagacatc
tcctcgtacattgaacagacacggtga
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