KEGG   Xenopus laevis (African clawed frog): 494657
Entry
494657            CDS       T01010                                 
Symbol
wdr82.L, mst107, swd2, tmem113, wdr82, wdr82-a, wdr82-b, wdr82a
Name
(RefSeq) WD repeat-containing protein 82-A
  KO
K14962  COMPASS component SWD2
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    494657 (wdr82.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    494657 (wdr82.L)
   03036 Chromosome and associated proteins [BR:xla03036]
    494657 (wdr82.L)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     494657 (wdr82.L)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     494657 (wdr82.L)
    COMPASS/SET1 complex (yeast)
     494657 (wdr82.L)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 EIF3I Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_NOL10_N WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_RFWD3 Beta-prop_WDR75_1st WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_ACSF4 PAC11 Beta-prop_IFT140_1st Beta-prop_WDR41 Tricorn_2nd Nucleoporin_N Beta-prop_NWD2_C MinC_C Bacteriocin_BacA
Other DBs
NCBI-GeneID: 494657
NCBI-ProteinID: NP_001087972
Xenbase: XB-GENE-6255612
UniProt: Q640J6 A0A974HPZ4 A0ABD8D051
LinkDB
Position
4L:127321476..127332766
AA seq 313 aa
MKLTDGVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFISASLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKA
VTLEASFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaaactcaccgatggtgtgctccgaagttttcgagtggcaaaggtcttccgggaaaac
tctgataaaatcaactgcttcgactttagtccaactggtgaaacggtgatatccagtagc
gatgatgattcaattgtgctttatgattgccaggagggaaagcccaagaggaccttgtac
agtaaaaaatatggcgttgacctaatcagatatacacatgcagctaacacagtggtctac
agctccaacaaaattgacgacacaataagatacctctctcttcatgataataaatacatc
cgttatttccctggacatagcaagagagtagtagctttgtctatgtctcctgtcgatgat
acattcatttctgcatcattagataaaaccatccggctatgggatcttcggtctcctaac
tgccagggtctaatgcatcttcaagggaaaccagtgtgctcatttgaccccgagggtctt
atttttgcagctggagtaaattcagagatggtcaagttgtatgatcttcgctcttttgat
aaaggtccatttgcaaccttcaaaatgcagtatgatcgaacctgtgagtggacttctctg
aaattcagccaagacgggaaacttattttaatgtcgactaatgggggcttccttcgtctg
gttgatgcttttaagggggctgttatgcacacgtttgggggctacaacaatagtaaggct
gtcactctggaagcttccttcactccagattcccaatttattatgattggctcagaagat
ggcaaaattcatgtttggaattgcgaaagtgggatgaaagtagcagtactggatggaaag
cacacaggtcctatcacatgcctgcagtttaatcccaaattcatgacatttgcaagtgct
tgctcgaacatggctttttggctaccaactattgatgactga

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