Xenopus laevis (African clawed frog): 494754
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Entry
494754 CDS
T01010
Symbol
srrm1.L, pop101, srm160
Name
(RefSeq) serine and arginine repetitive matrix 1 L homeolog
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
494754 (srrm1.L)
03015 mRNA surveillance pathway
494754 (srrm1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
494754 (srrm1.L)
03041 Spliceosome [BR:
xla03041
]
494754 (srrm1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
494754 (srrm1.L)
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
494754 (srrm1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
494754
NCBI-ProteinID:
NP_001131046
Xenbase:
XB-GENE-17334141
UniProt:
B2GTX8
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Position
2L:93474343..93509823
Genome browser
AA seq
774 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDTGKVNLEVIKPWITKRVTEIL
GFEDDVVIDFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLATLKKQDDDKDKRDKDDKDRDKNDRSRSPRRRKSRSSSP
RRRSPVRRERKRSHSRSPRHKTKSRSPSPVIEKKEIVIPEPEPSIKVKEPFVQEATSTSD
ILNAMKPEPAADKKESSPELNTCKPKERERHRHRSRSRSKSKSRSPSHSRPRRRHRSRSR
SYSPRRRPSPRRRPSPRRRSPPRRMPPPPRHKRSRSPLRRRRRSSASLSGSSSSSSCSRS
PPAPKKQPKKISSSPPRKPRRSSPSSSPPPRRRYRPSPTPPPKRRSPSPTQSSRPRKVRG
SVSPARPPVIKHKVVEKRKSPSPPSKPRKRDLSESDDDKGGKTAPADSVQRRRQYRRQNQ
QSSSESGSSSSSEDERPKRISVKNGEVGRRRRHSASRSLSASRKRPKESSPRRRRRSPSP
PPSRRRRSPSPAPPPRRRRSSSQRRRSPSPPPRRHSPTQRRYSPPIQRRYSPSPPPKRRS
SPLPPPKRRVSLSPPSKRRMSHSPPPKHKSSPGGKRRSPSLTSKHRKKSSPSRSGRETRS
PQISRLSPSPLSRLDRSSESPPEQRRIPSVSPLRRQPSPSPSPRPIRRVSRTPEPKIKQS
SSPEPARRASRSVSGSPEPAPKKQPPSPSPTRRGGWLPPQWGYRWNSPLFWRRL
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggatttttccgcggtacaagtgcagagcaggacaatcgattcagcaacaaa
cagaagaaacttttaaaacaactgaaatttgcagaatgtctggagaagaaggtggatacg
ggaaaagtaaatctagaagtaattaagccatggataaccaaacgtgttacagaaatactg
ggttttgaagatgatgtagtcattgactttatcttcaaccagttggaagtaaagaatcca
gactccaaaatgatgcagataaatcttacaggctttttaaatggcaaaaatgcccgagaa
ttcatgggtgagctttggccactgctgctgagtgcccaagaaaatattgctggtatacca
tctgcattcctggagctaaaaaaggaagaaataaaacaaagacaaattgaacaagaaaag
ctggcaactttaaagaagcaagatgatgataaggataaaagagacaaagatgataaagac
agagacaaaaatgatcgatccagaagtccaagaagacgtaaatcaaggtcttcctcacct
cggagaagatctccagtcagaagggaaagaaagagaagccactctcgttcaccacgtcac
aagacaaaaagccgtagcccttctcccgtcattgagaagaaagagatcgtaataccagaa
cctgaaccatctataaaagtgaaagagccttttgtccaggaggcaacatcaacaagtgac
atattgaatgctatgaaaccagagcctgctgcagataaaaaggagagctcacctgaacta
aatacttgcaaacctaaagagcgagagcggcatcgacatagatcgcggtcacgatcaaaa
tctaaatctcgatctccgtcacactccaggccccgcagacgccacaggtcacggtccagg
tcctacagtcccaggagacgaccaagtcctagacgtaggccttctccaagaaggaggagc
cctccgcgtcgcatgcctcctccacctagacacaagagaagcaggagtccattgaggagg
agaagacgttcatctgcttctttgtctggaagcagctcatcttcatcatgttcgcggtca
cctccagccccaaagaagcagcccaagaagatatcttccagtcctccccgcaaacctcga
cgatcttctccttcatcaagtccaccaccacgaagaaggtacaggccttctccaactcca
cccccaaagagaagatccccatctccaacccagtcctctcggcctaggaaagttagaggt
tctgtatctcctgctagacctccagtcataaaacataaagttgttgaaaagcggaagtcc
ccttcacctccctctaagccccgcaaaagggatttatcagaatctgatgacgacaaagga
ggaaaaaccgcaccagcagattctgtgcagcggcggcggcagtacagaaggcagaatcag
cagtcctcttcagaaagtggttcttcatcctcttctgaagacgaaaggcctaaacgtatt
tctgtaaagaatggggaggttggaaggaggcggcgacattcagcctctcgtagtctttct
gcttcacgaaaacgacctaaagaatcctcaccacgccgacgaaggaggagcccatctcca
cccccttcaagaagacgaagaagtccatctcctgctcctcctcctagaaggcgtcggtct
tcttctcagagacgcagatctccgtctccacctccacgaagacactctcccacgcaaagg
cgatactctccacctatacaaagaagatattctccctcccctccacccaaaagaagatcc
tcacctcttccacctccaaaacgcagggtctcattatctcccccatcaaagcgtagaatg
tcccactcaccaccacccaaacataagagctctccaggaggcaagaggcgttccccttct
ctgacatccaaacatagaaaaaagtcttctccaagcagatcgggccgtgagacccgctca
ccacagattagtcgactatctccttcacctctcagccggttagacagaagctcagagtct
cctccagaacagaggagaattccatctgtatccccactgaggaggcagccatccccctct
cctagtccacgaccaatcagaagggtgtctagaaccccagaaccgaagataaagcaatct
tcaagtccagagccagccagaagggcatccagatcagtgtcaggatcacctgagccagct
cctaaaaaacaaccaccttctccttcaccgactaggagagggggatggctgcctcctcag
tggggatacagatggaattctcctctgttctggaggagactctga
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