Xenopus laevis (African clawed frog): 494780
Help
Entry
494780 CDS
T01010
Symbol
fip1l1.S, fip1l1
Name
(RefSeq) factor interacting with PAPOLA and CPSF1 S homeolog
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
494780 (fip1l1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
494780 (fip1l1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
494780 (fip1l1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
494780
NCBI-ProteinID:
NP_001088083
Xenbase:
XB-GENE-985503
UniProt:
A0AUS9
LinkDB
All DBs
Position
1S:28783686..28827806
Genome browser
AA seq
583 aa
AA seq
DB search
MVVSSGTSGSTAPTPSSPTTSTVATAVSVSTATADGGGGGGGDEEEEWLYGEENEATAAD
DDEEEDITSSHPVAGIEAETSENGVVKTVTETEDDSESDSDDDDDDVHVTIGDIKTGAPQ
YVPYGTTPVNLNIKTGGRIYGPTGGKGKGVDLDAPGNINGVPLLEVDLDSFEDKPWRKPG
ADLSDYFNYGFNEDTWKAYCEKQKRLRMGLDALPISSTTNKIMVQQGRTGNAEKDTILQS
IKPEFTSPTSLFKPGVPPPSRKISSTIDVIGQTTTITRVEGRRRGANESNIQVVSEQSPS
EVDNNFIKPPPPFFPPGAPPTHLPPPPLFPPLPNVSTAPPLIPPPGSISFSMQKPSRYGI
PITVPPPGFPPPPGGPPPSLIPTIESGHSSGYDGRSAPAFPYGSVSFPHMPGSAGPWSSL
VDASKPWDYYPRREKDRERDRERERDRDRDRERDRERVRERERDRERERDHSPSTGAYNS
EEERYRYKEYSERTERTERSYERHRERISREKEERHRERRHREKEEAPRHKSSRSSSRRR
HDSEEGDSHRRHKHKKSKRSKEGKDAGAEPAQESESVESTNAD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggtggtttcatcggggacaagcggcagtaccgcccctactccctcctcacccaccacc
tccacagtcgcaaccgctgtcagcgtctcgacggcgacagcggacggaggaggagggggc
ggcggtgatgaggaagaggaatggctgtacggggaagaaaatgaagccacggcagcagat
gatgatgaagaagaagacataacaagctctcaccctgtagctggaatcgaagcagagact
tctgagaatggtgttgtgaaaacggtgactgagacagaagatgacagtgaaagtgacagt
gatgatgatgacgatgatgtccatgttaccataggagatattaaaactggagctcctcag
tatgtgccatatggaacaacccctgttaatctgaatattaaaactggggggagaatatat
ggaccaacaggaggaaaaggtaaaggggtagatttggatgccccaggaaatattaatggc
gtacctctgttggaagtagacttggactcttttgaggacaaaccttggcgaaaaccaggt
gctgatctgtcagactattttaattatggttttaatgaagatacatggaaagcttactgt
gaaaaacagaagaggctaaggatgggcttggatgctcttccaatctcttctacaacaaat
aaaattatggtacagcagggcagaactggcaatgcagaaaaggataccattttgcagagt
atcaaaccagagtttacttctcccacttcattattcaaacctggtgttcctcctccaagt
cgaaaaatctcaagcacaattgatgtgatcggtcagacaaccactatcactcgtgttgaa
ggacgccggcgaggtgcgaatgaaagcaatatccaggtagtttcagaacagtctccttct
gaagtggataataattttatcaagccacccccaccatttttccctcctggcgcacccccc
acacacctaccaccacctcccctttttcctccactgccaaatgtcagtactgccccacct
ctaatcccaccacctggatcaatatcgttctcgatgcaaaaaccatctcgatacggaatt
cccatcactgtgccacctccaggttttcctcctcctcctggaggtccaccaccatctctt
atcccgacaatagaaagtggtcactcttctggctatgatgggcgatcagctcctgcattt
ccttatggcagcgtgtcttttcctcacatgcctggttctgctggtccctggtccagcctg
gtagatgcctccaaaccgtgggactactatcccagaagagagaaggacagggaacgtgac
agggagcgagagcgtgatagggatcgggacagagagcgagatcgtgagcgagtccgtgag
agggaacgggacagagaacgtgaacgtgatcacagcccaagcacaggcgcatataatagc
gaggaagagcgatacaggtacaaggagtatagcgagcggacagaaagaacagaaaggagc
tacgagcgtcaccgagagagaatcagcagagaaaaagaggaaaggcaccgggagaggcgg
catcgagagaaagaggaggcgccccgtcacaaatcatcccggagcagcagcaggcgccgc
cacgacagcgaagagggcgacagtcacagaagacacaaacacaaaaagtccaaaagaagc
aaagaagggaaagatgctggcgctgaacctgcccaggaatccgaaagtgttgaatccacc
aatgccgattag
DBGET
integrated database retrieval system
