Xenopus laevis (African clawed frog): 495050
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Entry
495050 CDS
T01010
Symbol
cnot6l.S, ccr4b, cnot6l, cnot6l-a, cnot6l-b
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like-B
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
495050 (cnot6l.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
495050 (cnot6l.S)
Enzymes [BR:
xla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
495050 (cnot6l.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
495050 (cnot6l.S)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
495050 (cnot6l.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_1
LRR_14
LRR_6
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
495050
NCBI-ProteinID:
NP_001088222
Xenbase:
XB-GENE-977554
UniProt:
Q5XH73
A0A974I0I0
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All DBs
Position
1S:complement(71410141..71469022)
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AA seq
550 aa
AA seq
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MPKEKYDPPDPRRIYTIMSAEEVANGKKSRWDELEISGRVRSLSMSLWSLTHLTVLHLSD
NNLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNVVSLRELLLNNNLLRVLPFELGRLF
RLQTLGLKGNPLSQDILGLYQEPDGMRKLLNYMLDNLSVHPEQLPQRPWITLKERDQILP
SVPFTVMCFNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVSCDADIISLQEVETEQ
YYTLFMPALKERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQI
AMANSEGSEAMLNRVMTKDNIGVSVLLEVHTDFSGAGMKPHHSSEKQLLMVANAHMHWDP
EYSDVKLIQTMMFVSELKSIIEKAASRPGSPTPDSNSIPFVLCADLNSLPDSGVVEYLTN
GGVADNHKDFKELRYNECLTNFSCNGKNGTPDGRITHGFQLRSAYENNLMPYTNYTFDFK
GVIDYIFYSKTHIDVLGVLGPLDPQWMMDNNIAGCPHPHIPSDHFSLLTQLELHPPFLPV
INGVHLPSRR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagaaaaatatgaccctcctgatcctcgcagaatttataccatcatgtcggca
gaggaggtggccaatggaaaaaagtcacgctgggacgagttggagatttctggtagggtg
cggagcttgagtatgtcactctggagcttgacgcacttgacagtgttgcacctcagcgat
aacaacctttctcgtattccacctgatattgccaagctccataatctagtttatctggac
ctttcatccaataaactcagaagtttaccagcagagctagggaacgtagtgtctctcagg
gaattgcttttaaataacaatctgttacgggttttaccttttgaactggggcgactgttc
aggcttcagaccttggggttaaaaggcaatcctttatcacaggacattcttggcctgtac
caggaaccagacgggatgcgaaagctactgaattacatgcttgacaatctatccgttcat
ccagaacagcttcctcagaggccgtggattacattaaaagaacgagaccaaattcttccc
tcagtacccttcacagtaatgtgcttcaatgtgctatgtgataaatatgctacccggcag
ctgtatggctattgcccatcctgggcattaaactgggaataccgaaagaaaggcatcatg
gaagagattgtcagttgcgatgcagacatcatcagtcttcaggaagttgaaactgagcaa
tactacaccctttttatgccagcattaaaggaacgtggatatgatggttttttctctcca
aagtcacgtgccaaaatcatgtctgatcaagagaaaaagcacgtggatggttgtgcaata
ttcttcagaacagaaaaattcagcctagtgcaaaagcacacagtggaatttaatcagatc
gcgatggcaaactctgagggttcagaagccatgctgaacagagtgatgacaaaggacaat
attggggtgtctgtcttgttggaggttcatacagatttttctggtgctggcatgaaaccc
catcactcttcggaaaagcagctgcttatggtggcaaatgctcacatgcactgggaccct
gagtattcagatgtgaagctcatccagacaatgatgtttgtctctgaactgaaaagcatt
attgagaaggcggcaagtaggccagggagtcccactccagattccaattccatccccttt
gtgttgtgtgctgatctcaactctttgccagattcaggtgtggtggagtatctgacaaat
ggaggggtagccgacaatcacaaggatttcaaagagctcagatacaatgagtgtctcact
aacttcagctgcaatgggaagaatgggaccccagatggaagaatcacacatggcttccag
ctgaggagtgcctatgaaaacaacttgatgccttacacaaattacacctttgatttcaaa
ggtgttattgactacatcttctattccaagacacacatagacgttcttggcgtcctgggg
cctttagatcctcagtggatgatggataacaacatcgctggctgcccacacccccacatc
ccttctgaccacttctcactgttaacgcagctggaactccaccctccatttctgcctgtc
attaacggggtgcacttgccaagcaggaggtag
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