Xenopus laevis (African clawed frog): 495230
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Entry
495230 CDS
T01010
Symbol
rnps1.S, rnps1, rnps1-a, rnps1-b, rnps1.L
Name
(RefSeq) RNA-binding protein with serine-rich domain 1-A
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
495230 (rnps1.S)
03015 mRNA surveillance pathway
495230 (rnps1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
495230 (rnps1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
495230 (rnps1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_3
RRM_5
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
495230
NCBI-ProteinID:
NP_001088379
Xenbase:
XB-GENE-941532
UniProt:
Q5XG24
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All DBs
Position
9_10S:complement(100052535..100063916)
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AA seq
283 aa
AA seq
DB search
MAPSPSKRKERSEDRAKERGKEKAPGKEVTEKDRGRDKAKKRRSGSSGSSSSSHSRSSSS
SSSSSGSSSGSSSGSSSSASSRSGSSSSSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKQ
PKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSK
GYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLTPWPMRPMPRRFSPPRRMLPPPPM
WRRSPPRMRRRSRSPRRRSPVRRRSRSPARRRHRSRSSSNSSR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggctccttcacccagcaagaggaaggaacgctcagaagacagggcaaaagaaagaggc
aaagagaaagctccagggaaagaagtgacagagaaagatcgcgggcgagataaagcaaag
aagaggcgcagcggctctagtggcagtagcagcagcagccattcccgctctagttcatcc
tccagctcctcgtcgggttccagttccggatctagctctggttccagttcatcagcttcc
agccgttcaggaagttccagttcctctcgcagctctagttccagcagctcctctggttct
ccaagtccatctcgccgccgccatgataacaggaggcgctctcgttccaaatccaaacag
ccaaaacgtgacgaaaaagagagaaaacggaggagcccaagtcctcgacccacaaaagtt
cacatagggaggctgacaaggaatgtaactaaggaccatattctagagatcttctccaca
tatggcaaaataaagatgatagatatgcctgttgatcgctaccacccacacctgtccaag
ggctatgcctatgttgagtttgaagctcctgaagaagctgagaaagccttaaaacacatg
gatggaggacagattgacggtcaagagatcaccgcttcagctgttctgacgccgtggcct
atgcggccaatgcccagaaggttcagccccccacgacggatgttgccgcctcccccaatg
tggcggcgctctccacctcgtatgaggagaaggtctcgttcacctcggagacgctcccca
gtaagacgccgttcacggtcacctgctcgtcgccgccatcgcagccgttccagttcaaac
tcatcgcgatga
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