KEGG   Xenopus laevis (African clawed frog): 495318
Entry
495318            CDS       T01010                                 
Symbol
lsm4.S, lsm4
Name
(RefSeq) LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03018  RNA degradation
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    495318 (lsm4.S)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    495318 (lsm4.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    495318 (lsm4.S)
   03041 Spliceosome [BR:xla03041]
    495318 (lsm4.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     495318 (lsm4.S)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     495318 (lsm4.S)
Spliceosome [BR:xla03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    495318 (lsm4.S)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 495318
NCBI-ProteinID: NP_001088454
Xenbase: XB-GENE-945540
UniProt: Q5U5A5
LinkDB
Position
1S:94237477..94256154
AA seq 138 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVMSKGRGRGGMQQQKQMKGRGAGGGGRGVFGGRGRGAP
GGGRGQQDKKPGRQSGKQ
NT seq 417 nt   +upstreamnt  +downstreamnt
atgctgccgttatcattattaaaaaccgcccagaatcacccaatgttggtggaattaaag
aatggtgaaacatacaatggtcatctagtgagctgtgacaactggatgaacatcaatcta
agagaagttatctgtacttcaagggatggtgataaattttggaggatgccagagtgctat
atacgtggaagcacaattaaatatttgcggattcctgatgagattattgacatggtaaag
gaagaagtgatgtcaaagggcagaggtcgtggaggcatgcagcaacaaaaacagatgaag
ggtagaggagccggtggaggtgggcgaggtgtctttggagggcgaggcaggggcgcccct
ggtggaggaaggggccagcaagacaaaaagccaggccggcagtctgggaaacagtga

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