Xenopus laevis (African clawed frog): 496308
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Entry
496308 CDS
T01010
Symbol
afdn.L, af-6, af6, mllt4, mllt4.L
Name
(RefSeq) afadin
KO
K05702
afadin
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04520
Adherens junction
xla04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
496308 (afdn.L)
04530 Tight junction
496308 (afdn.L)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
PDZ_6
RA_2
PDZ_2
RA_3
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
496308
NCBI-ProteinID:
NP_001171575
Xenbase:
XB-GENE-6252098
UniProt:
D5JEJ8
LinkDB
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Position
5L:54468757..54566079
Genome browser
AA seq
1780 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPRYSLYEVHVSGEERKLDFEEKPLVVQLNWNKD
DREGRFVLKNENDIFPLKKTQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKRRERDVLKQS
ADKEEGPQLRDDGENLQLAMEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRSS
DGRPDSGGTLRIYADSLKPNIPYKTILLSTNDTADFAVIEALEKYGMEKENPKEYCIAKV
VLPPGAQHSDKGMKEFILDDEECPLHIFRDWPSEKGELVFQLKRRPTDSLLKQNRKHESK
SGKSKDRTDHYSLSLSTDKLPYLVELSQLFGPGIQLHHCDLNNMDGVVTVTPRSIDADTY
VDGHHISETTMLHSGVKVQFGSSHVFKFVDPNLDHLLGKRVSDTGQIGKNQRTKQGLQET
TFGLEGDVLGDVTLPANKMVSKLDNERTPSMTERGMVKPIIRMDKQQDQRVQNGRSQDSQ
GPENVLPASIEFRENSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTCRYVLSNKYRPDSN
AAERTHKVIAVVNKMVGMMESVIQKQKNIAGALAFWMANASELLNFIKQDRDLNRITLDA
QDVLAHLVQMAFKYLVHCLQSELTSSMPAFIDDPEENDSQRPKIEDVLHTLTGAMSLLRR
CRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLAHIEAWAEKQGL
ELAADCHLSRIVQATTLLTMDKYSHQDIPNINNTCFKLNSLQLQALLQNYHCAPDEPYIP
TELIDSVVSVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGLQEF
LEPLCQRGFCRLVPHPRSPGIWTIYFEGADYENNLLTGNTDLPLRKEPEIITVTLKKQNG
MGLSIVAAKGAGQEKLGIYIKSVVKGGAAEVDGRLAAGDQLISVDGQSLVGLSQERAAEL
MTRTGSVVTLEVAKQGAIYHGLATLLNQPSPLMQRDRRGSGKPRPKSEGFELYNNTSQNG
SPDSPQAQWPEYTEPKKLPGDDKLLKNRADHRSSPNVANQPQSPGGKTTYSSSSTVKITS
VSTGNLCTEEETVPARPETYPIPTQTYAREYFTFPTPKSQDRIGPAQNQWQGYEDKFQVQ
MGNNHARNNSAQQIAYSEEELRDNLAFQSERGHIEPQVQKDMEHLEQNLDAKETWFNRGS
SMESSTSCQDLNNSKTHSMGSLTKTGPGRWKTPISSQTATVLLPQPVRTDLPPPPPPPVH
YGAEFEAVPIDLPLPPPPSENQLGLSANSQAAALERKKREEHQRWYEKEKARLEEERERK
RREQERKLGHVRPQPPTLPPQPVIPQSPPLIPPPNVVQTRTEKPATLPRQQDTVIRELQP
QQQPRTIERRDLQYITVSKEELSSSDSLSPDPWKRDAKEKLEKQQQMHIVDMLSKEINEL
QSKPNRTSEENDRLRKLMLEWQFQKRLQESQQKDDDDDDDEDDDDVDTMLIMQRLEAERK
ARLQDEERRRQQHLEEVRKREAEDRLRQEEEHRHQEEERARREAEEKRRQEEEYYTRLEA
ERRRIHEEADRRLLEPEEPGLYRPPLPREYELSSPTLLPNPPPPPPQRNTSYLKTQALSP
DTVYTAKFVTYTDDEEDTNLSGPNSYSGSSGAAVPSNEVYKGPRDMRLKSQDGEAYGPGG
APESLTFKERQRLFSHGQDVSNKVKASRKLMELENELNTK
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagtcgggaagaggagcgccgcaaactggccgacatcattaaccactggaac
gccaaccggctcgacctgttcgagatcagccagcccaccgaggatctggagtttcatgga
gtcatgcgcttttactttcaagataaagctgctggaaattttgcaacaaaatgtattaga
gtttccagcactgccacaacacaggatgtcattgaaactttggcagagaaatttcgtcca
gatatgagaatgttgtcttctcctagatactctttgtatgaagtacatgtcagtggagaa
gaaagaaaactagattttgaagagaagcctctggtggttcagctgaattggaataaagat
gatcgggaaggaagatttgttctaaaaaatgaaaatgacatctttcctctaaaaaagact
caaagcaatgggccagagaaacaggaaaaagaaggtgtaatccagaattttaagaggacc
ttgtctaaaaaggaaaaaaaggagaagaaaagacgtgagagagatgttttgaagcagtca
gcggataaagaagaggggccacagctgagagatgatggagagaacttacagttagctatg
gaggtatacaaagatatgccagagaccagctttactcgcacaatatctaacccagaggtg
gttatgaaaagaagacgacagcaaaaattggaaaaaagaatgcaagaatttcgtagctca
gatggccgaccagactctggtgggacattgaggatttatgctgacagtttaaaaccaaat
ataccatacaaaacaattttgttatccactaatgatacagcagattttgctgttatagaa
gctttggaaaaatatggaatggaaaaagaaaaccctaaggaatactgcatagctaaggtc
gtattgccacctggagctcagcattcagacaaaggcatgaaagaatttattctagatgat
gaagaatgtcctcttcacatatttcgagattggccaagtgagaaaggtgaacttgtgttc
cagttgaaaagacggccaacagatagtcttctaaagcaaaaccggaagcatgaaagcaaa
tcaggaaaaagcaaggaccgaaccgaccactattctttatcactttctactgataaactg
ccttacttggtagaattaagtcagttgtttggcccaggaatacaacttcaccactgtgac
ctaaataatatggatggagtagtcacagttactccaagaagcattgatgctgatacctat
gtggatggtcatcatatctcagagactactatgctgcacagtggagtgaaggttcaattt
ggttcttcacatgtgttcaaatttgttgaccctaaccttgatcacttgctgggtaaaagg
gtttctgatactgggcaaattggtaaaaaccaaaggaccaaacaagggttgcaagaaact
acttttggccttgaaggtgatgttcttggcgatgtcacgttgccagcaaataagatggtc
agtaaactggacaatgagagaacaccaagtatgactgagagaggaatggtaaaaccaata
ataagaatggacaagcaacaagatcaacgtgtgcaaaatggcagatctcaagattcacaa
ggaccagaaaatgtgttgcctgcaagtattgaatttagggaaaattctgaagatgccttt
ttgtctgccattattaactatacaaacagttcaactgtgcatttcaagctttcaccaaca
tatgtgctgtacatgacctgtcggtatgtattatccaacaagtacagaccagattcaaat
gctgctgagcgtacacacaaggttattgctgttgtgaacaagatggtgggaatgatggaa
agtgtaatccagaagcaaaagaacattgctggtgctcttgctttctggatggcaaatgct
tcagagcttctcaatttcataaagcaagaccgagatctcaatcgtatcacattggatgca
caagatgttcttgcacatttagttcagatggcattcaaatacctggtgcactgtcttcag
tctgaactgaccagctccatgcctgcttttatagatgatccagaagaaaatgattcccaa
aggcctaaaatagaagacgtcttgcatactctgacaggtgccatgtcacttctaaggcgt
tgccgggtcaatgcagcattaactattcagctcttctcgcagctattccatttcatcaac
atgtggctattcaacaggcttgtaacagatccagactctggtttatgctctcactattgg
ggggcaataatacgtcagcagcttgcacacatagaggcctgggctgaaaaacaaggcctc
gaattagctgcagattgtcaccttagcagaatagttcaggctactactcttctcacaatg
gataagtactcacatcaagatattccaaatataaataatacatgttttaagctgaactcc
ttacaactgcaagctctcctgcagaattaccactgtgctcctgacgaaccatacatccca
acggagttgatagacagtgtggtgtctgtagcagaaaacactgctgatgaattggctcga
agtgatggtagagaagttcagctggaggaggatcctgatcttcaactacctttccttttg
cctgaagatggttactcgtgtgatgttgttaggaacattcctaatggccttcaggagttt
cttgaaccactctgccagagaggtttctgcagacttgtccctcacccacgttcaccgggc
atatggacaatttactttgaaggagcggactatgaaaataatttgttgacaggcaataca
gacctgccattaaggaaagaacctgaaataatcactgtgacacttaaaaagcaaaatgga
atgggtttgagtattgttgctgcaaagggtgcaggacaagaaaaacttggtatttacatt
aaatctgtggtgaaaggaggtgctgcagaagtggatggccgtttagcagcaggagaccaa
cttataagtgtggatgggcaaagtttagtgggtttgtcccaagaaagagctgcggagctc
atgactagaactgggtctgtagtaacccttgaggtagcaaagcaaggagcaatataccat
ggacttgccacactactaaaccaaccatctcctcttatgcaaagagatcgacgtggctca
ggaaaaccaagaccaaagagtgaaggttttgagctttacaataacacttcccagaatggg
tctcctgatagcccccaggcgcaatggccagaatacacagagccaaagaagttaccaggg
gatgataaactattgaaaaaccgtgctgatcatcgttctagtcctaatgtggccaatcaa
cctcagagtccaggtggaaaaactacttattcaagcagctctacagtgaaaatcacttct
gtatccacgggaaatctatgcactgaggaagagactgtgccagcaagaccagaaacttat
cctatcccaacacaaacatatgcaagggagtattttacttttccaactcccaaatctcaa
gatcgaataggacctgctcagaaccaatggcaaggctacgaagataaattccaagttcag
atgggcaacaaccatgctagaaataattcagctcaacaaattgcttattctgaagaagaa
ctgagggataatttggcattccaatccgaaagaggacacattgaaccccaggtgcagaaa
gatatggaacatttggaacaaaatctggatgctaaagaaacttggttcaatcgaggctct
tctatggaatcaagtacatcttgtcaagaccttaataactctaagacacattctatgggt
tccttgaccaaaacaggacctggtcgctggaaaacaccaatttcttctcagacagctact
gttcttttgccccaacctgttagaacagaccttcctcctccaccacctccaccagttcat
tatggagcagaattcgaggcagtgcctatagacttacctctaccacccccaccatctgaa
aaccaactagggctttcagcaaattcacaggcagctgcgttagaaagaaagaagagggaa
gaacatcagaggtggtatgagaaagagaaggcccgtttggaagaagaaagagagcggaag
aggcgagagcaggaaagaaagctaggacacgttcgtcctcagccaccaactttacctcct
caaccagtaattccacagtctcctccattgattcctcctccaaatgttgtacaaaccaga
acagagaaaccggccactcttcctcggcaacaagatactgttatcagagagcttcaacct
caacagcagccacggaccatagaaagaagagacctccagtatatcactgtcagtaaagaa
gagctatcttccagtgatagcctttcaccagatccctggaagagagatgccaaggagaag
ctagaaaaacagcaacagatgcatattgtggatatgctaagcaaagagatcaatgaactg
caaagcaaacccaaccgaacttctgaagaaaatgacaggcttcgcaaattaatgcttgaa
tggcagtttcagaagagactacaagagtcgcagcagaaggacgatgatgacgacgacgat
gaagatgatgatgatgtggataccatgcttatcatgcagcgtttggaagctgaaagaaaa
gcaaggttacaggatgaagagcggagacgacaacagcatttggaagaggtgcgcaaacgg
gaggcagaagatcgccttaggcaggaagaagaacatcgtcatcaagaggaggaacgggca
aggagagaggctgaagaaaagaggagacaggaagaagagtactacactcgcttggaagct
gaaaggcgcagaattcatgaagaagcagaccggcgattgctagagcccgaagagcctggt
ctgtacagacctccactcccacgggaatatgagctttcttccccaaccctcctacctaat
cctccgcctccccctcctcaacgtaacacctcttacctcaaaacacaagccctctcccca
gacacagtttacactgccaagtttgttacatacactgatgatgaggaagacacaaatcta
tcaggaccaaattcttattctggatcatctggtgcagcagttcctagtaatgaagtttat
aaaggtccaagggatatgcgactaaaaagccaagatggagaagcttatggccctggtgga
gccccagagagcctgacctttaaggagcgccagcgtctcttctctcatggccaggatgtg
tctaacaaagtaaaggcttccagaaaattaatggaactggaaaatgagttaaatacaaaa
tga
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integrated database retrieval system
