KEGG   Xenopus laevis (African clawed frog): 496353
Entry
496353            CDS       T01010                                 
Symbol
ercc8.S, ercc8
Name
(RefSeq) excision repair cross-complementation group 8 S homeolog
  KO
K10570  DNA excision repair protein ERCC-8
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03420  Nucleotide excision repair
xla04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    496353 (ercc8.S)
  09124 Replication and repair
   03420 Nucleotide excision repair
    496353 (ercc8.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xla04121]
    496353 (ercc8.S)
   03400 DNA repair and recombination proteins [BR:xla03400]
    496353 (ercc8.S)
Ubiquitin system [BR:xla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     496353 (ercc8.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      496353 (ercc8.S)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C WD_LRWD1 ANAPC4_WD40 Beta-prop_Aladin WDR90_beta-prop_4th WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_RIG_1st Beta-prop_NUP159_NUP214 Beta-prop_HPS5 DUF6390 Tricorn_2nd
Other DBs
NCBI-GeneID: 496353
NCBI-ProteinID: NP_001088973
Xenbase: XB-GENE-1000482
UniProt: Q5HZM7 A0A974DSA2
LinkDB
Position
1S:complement(44481922..44486859)
AA seq 399 aa
MLGFLWARQTGQDSPVQLQRAEATRRILSLELNKDRDVERMHENGINTLDIEPVEGRYML
SGGADGIIVLYDLANLGKTQSYTCKALCKVGKSHPDVHKFSVETVQWYPHDTGIFTSSSF
DKTLKVWDTNSLQLAEVFHFDETIYSHHMSPLATKHSLIAVGTKNPKVQLCDLKSGSSSH
ILQGHRGEVLAVCWSPRYDYILATASTDSKVKLWDVRKASGCLITLDQHNGEKSKASSEA
TNTAHNGRVNGLCFTSNGLHLLTVGTDDRMRLWDSSSGENTLVNYGKVCNNSRKSLKFTV
SVGCNPEFVFVPYDSTIAVYTIYSGQKISVLRGHYNSVDCCVFQPNFQELYSGSKDCNVL
AWIPSIREPVPDEDSKKSGHRTHINPAFEDAWSSSEDES
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgcttggatttttatgggcacgacagacaggccaagatagccctgtccagctccagcgt
gctgaagcaacaaggaggatactgagtttggagttaaataaggatagagatgttgaaaga
atgcatgagaatggtatcaacacacttgatattgagccagtagagggcagatatatgcta
tctggaggagccgacgggataattgttctttatgatcttgccaatcttggcaaaacccaa
tcttatacttgtaaagcattgtgtaaggttggcaaaagccaccctgatgtgcacaaattt
agtgttgaaacagttcagtggtatcctcacgatactggcatctttacatcaagctccttt
gataaaacactaaaggtatgggacactaattctttacagctagctgaagtttttcatttt
gatgagacaatttacagccaccacatgtctcctttggcaacaaagcacagtttgattgca
gttggcactaaaaacccgaaagtgcaactttgtgacttaaaatctgggtcaagctctcat
attttgcaaggtcatagaggagaagtacttgcagtttgctggtccccacgttacgattat
atcttagcaactgcgagtaccgacagcaaagtaaaattatgggatgtccgcaaagcatct
ggatgtctgataacactggaccagcataatggtgaaaagtctaaagcttcttcagaagcc
acaaacacagcacataatggcagggttaatggattatgcttcactagtaatggcctccat
cttttgacagtaggaactgatgataggatgagactttgggacagttcatctggagaaaat
actctagtgaactatggaaaagtttgtaacaacagcaggaaaagtctaaaatttacagtg
tctgtaggctgtaatccagagtttgtatttgttccatacgatagtactattgctgtatac
actatctactctgggcaaaagataagtgtattgaggggacattataacagtgtggactgt
tgtgtatttcagcctaattttcaagagctatacagtggcagcaaagactgcaatgttctt
gcctggattccttccatccgtgaaccggttcctgatgaggattcaaagaaatcaggacat
cggacacatattaatcctgcatttgaggatgcatggagcagcagtgaagatgaaagttaa

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