Xenopus laevis (African clawed frog): 503680
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Entry
503680 CDS
T01010
Symbol
tbp.S, gtf2d, gtf2d1, sca17, tbp, tbp-a, tbp-b, tfiid, xtbp
Name
(RefSeq) TATA-box binding protein S homeolog
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
503680 (tbp.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
503680 (tbp.S)
03021 Transcription machinery [BR:
xla03021
]
503680 (tbp.S)
Transcription factors [BR:
xla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
503680 (tbp.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
503680 (tbp.S)
RNA polymerase III system
TFIIIB
503680 (tbp.S)
RNA polymerase I system
SL1/TIF-1B
503680 (tbp.S)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-GeneID:
503680
NCBI-ProteinID:
NP_001089038
Xenbase:
XB-GENE-865786
UniProt:
Q5I004
A0A8J0Q2S6
LinkDB
All DBs
Position
5S:<41921099..41928230
Genome browser
AA seq
296 aa
AA seq
DB search
MDQNNSIPPFQGLASPQGSLTPAINIFSPMPYGTGLTPQPVQTINSLSVLEEQQRQQQQT
QQSTSQQVNLGSGQTPQLFHPQTLTTAPLPGNTPLYPSPMTPMTPITPATPASESSGIVP
QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG
AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY
EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaacaacagcataccccctttccaggggctggcatcaccacagggttctcta
acaccggcgattaacattttcagtccgatgccttatggaactggtctgaccccccagcct
gtgcaaacaattaacagtttatcagtattggaagaacagcaaagacaacagcagcagaca
cagcagtcaacatcacaacaagtgaatctggggtcaggccaaacccctcaactgtttcac
ccacaaactcttactacagcacctcttccaggaaatacaccattatacccctccccaatg
actccaatgacacccattactcctgccacccctgcatcagaaagctcgggaattgttcct
cagctacagaacatagtgtccactgtaaatcttggctgcaaactggacctaaaaacaatt
gcacttagagcgcgaaatgcagagtataacccaaagcgttttgctgctgttataatgagg
atacgagagccacgtacaacagcacttatatttagttcgggaaaaatggtatgcactgga
gctaaaagtgaagaacaatcacgtttagcagcaagaaaatatgccagagttgtacagaaa
ctcggatttccagccaagtttttagattttaaaatacaaaatatggtgggaagctgcgat
gtgaaattccctatcagattagagggactggtccttacacatcagcagtttagcagttat
gagcctgaactgtttccaggtcttatctacagaatgatcaaaccaagaattgtcctgctt
atttttgtttctggaaaggttgtactgacaggtgctaaagttcgagcagagatctatgaa
gcttttgaaaacatctatcctatcctaaaaggctttagaaaaacaacgtaa
DBGET
integrated database retrieval system
