KEGG   Xenopus laevis (African clawed frog): 595045
Entry
595045            CDS       T01010                                 
Symbol
msh2.L
Name
(RefSeq) DNA mismatch repair protein Msh2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    595045 (msh2.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xla03400]
    595045 (msh2.L)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     595045 (msh2.L)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_II MutS_IV MutS_I AAA_27
Other DBs
NCBI-GeneID: 595045
NCBI-ProteinID: XP_018118021
Xenbase: XB-GENE-977522
UniProt: A0A1L8G6D6 A0A974CV64
LinkDB
Position
5L:complement(5952152..6022970)
AA seq 932 aa
MAVQPKEKLSMDSGAENGFLHFYQSMPEKPDTTVRVFDRNDYYTVHGGDALFAAKEVFKT
NGVIKYLGSGNKKLESVVLSKMNFESVVKDLLLVRQYRVEVYKNKSGGKYSKENDWQLAF
KASPGNLTQFEEILFGNNDMSTAVGVVGIKLVSSEGQRLVGVGYVDSTLRKLGVCEFPDN
DQFSNLEALLVQIGPKECVMPGGETAGDMGKLRQIVKRGGILITDRKRAEFSTKDSVQDL
NRLLKAKKGEQVTSAALPEMEKQVAMSALAAVMKYLELLSDESNFGQFVMTNFDLSQYMK
LDNAAVGALNLFPGSAEDTSGTQSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRVEERLN
LVEAFVMDVELRQCLQEDLLRRFPDLNRLAKKFQRQTANLQDCYRLYQAVNHLPTVVQAI
EKYEGTHQMLLLAVFATPLSDLSSDFSKFQEMIETTLDMDQVENHEFLVKASFDPNLTEL
REKMDELEKNMQGALGGAARELGLDAGKSIKLESNSQIGHYFRVTCKEEKALRNNKKFTT
IDIQKNGVRFTNSKLSSLSEEYMRNREEYEEAQNAIVKEIITISAGYVDPIQTLNDIIAQ
LDAVVSFAHVSNSAPVPYVRPVILEKGQGRIVLHSARHPCIEMQDDVAFIPNDITFEKEK
QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAQVSIVDCILARVGAGDSQLKG
VSTFMAEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIKAFCMFA
THFHELTALADQVPTVNNLHVTALTTEDTLTMLYRIKKGVCDQSFGIHVAELANFPKHVI
ETAKEKALELEEFQYVGNPDDCDDEPARKRRCEEKEEGEKIIQDFLSRVKALPLTEMSEE
EIKIKLKQFRADVLAKNNRFVSEVISRTKTGL
NT seq 2799 nt   +upstreamnt  +downstreamnt
atggctgtgcagcccaaagagaagttgtctatggacagcggggccgagaatggcttcctt
cacttctaccagtccatgcccgagaagcccgacaccaccgtgcgagtgtttgataggaac
gactactacacggtgcacgggggagacgcgctgtttgcggccaaggaagttttcaagacc
aatggggtgatcaagtacttgggatcaggaaacaagaaactggagagtgtggtgctgagc
aaaatgaactttgagtctgtagtgaaggatctgctgctggttcgtcagtatcgtgtagaa
gtttataaaaataaatctggaggcaaatactctaaggaaaatgattggcagttggctttt
aaggcctcgccaggtaatctcacacagtttgaggagattctattcggcaacaatgacatg
tctacggccgttggagtggtcggtatcaaactggtcagctctgaaggccagaggttggtc
ggggtcggttacgtggactctacactgaggaagctgggagtatgtgaatttccagataat
gatcagttctctaatctggaagctttgctggttcagattgggccaaaggaatgtgtaatg
cctggaggagaaactgctggagacatgggaaaactgaggcagattgtcaagagaggtggg
attctgataacagacagaaaaagggcagaattcagcacaaaagacagtgtacaagatctt
aatcgcctgcttaaagcaaagaaaggagagcaggtgaccagcgctgcattaccagagatg
gagaaacaggttgcaatgtcagccttggcggccgttatgaaatatctggagctgttatct
gacgagtctaactttgggcagtttgtgatgaccaactttgacctgagccagtacatgaag
ctagacaacgcggccgtgggggctctcaatctgttccctggatctgcggaagataccagc
ggcactcagtcattggcaggacttttaaataagtgcaaaactcctcaagggcaaagactt
gtcaatcagtggattaagcagcctctcatggacaagaacagagtcgaggaaaggttgaat
ttagtagaagcttttgtgatggacgtggaattaaggcagtgcctccaggaggatctgctc
cgtcgttttccggaccttaatcgcttggcgaagaaattccagagacagactgccaacctg
caggattgttatagactataccaggccgtcaatcaccttccgactgttgtacaagcaata
gaaaaatatgaagggacacatcagatgctgctgttggcagtgtttgcgacgcctctttct
gatctgtcgtcggacttctccaaatttcaagaaatgattgaaaccacattggatatggat
caggtggaaaatcacgagtttcttgttaaggcctcatttgatccaaacctgacggagctg
agagagaagatggatgagctggagaagaatatgcagggggccctcggtggtgctgcccgg
gagctggggctggacgctggcaaaagcatcaaactggaatcaaactcgcagattggccac
tacttccgcgttacgtgcaaggaggagaaggccttgaggaacaataagaagttcactaca
atcgacatacagaaaaatggggtcagatttaccaacagtaaactgagctcactaagtgaa
gagtacatgagaaaccgagaggaatatgaggaggcccagaatgctattgttaaagaaatt
ataactatttctgctggatatgtggatccaattcagacgctgaacgacatcattgcgcag
ttggacgctgttgtgagctttgcccacgtgtctaacagcgcgccagtaccgtatgtccgg
cccgttattctggagaagggacagggaagaattgtgctgcactcggccagacacccgtgt
atcgagatgcaagatgatgtggcgtttatacctaatgatattacatttgaaaaggagaag
cagatgtttcatattatcactggccctaatatgggtgggaaatcgacgtatatccgccag
actggtgtcatagtcctcatggcgcagatcggttgctttgtaccctgtgattctgcacaa
gtcagcatagtggactgtattcttgctcgagttggtgctggagacagtcagttgaaagga
gtttcaacatttatggctgagatgctagaaactgcctcgatactcaggtctgctacagag
aactctctgattatcattgatgaattgggtcgaggaacctccacgtatgatggttttggc
ctggcatgggcaatatccgaatacatttccactaaaatcaaggctttttgtatgtttgct
acccactttcatgaactaacagccctggctgaccaggtcccaaccgtcaacaatttgcat
gttaccgctctcaccacagaagataccctaaccatgctctaccgaataaagaaaggggtt
tgtgatcagagctttggaatccacgtggcagaacttgccaactttcctaaacatgttatt
gaaacggcaaaggaaaaggcgctggaattagaggaatttcagtatgttgggaaccccgat
gactgtgatgatgaacccgccaggaaaagacgctgcgaagagaaagaggaaggtgaaaag
ataatccaggatttcctctccagagtaaaagctttacccctgacagaaatgtcagaggaa
gaaataaagatcaagctgaagcagttcagagccgacgtcctcgcgaaaaataaccgtttt
gtcagtgaagttatttccagaaccaaaacgggattgtga

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