Xenopus laevis (African clawed frog): 595045
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Entry
595045 CDS
T01010
Symbol
msh2.L
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
595045 (msh2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xla03400
]
595045 (msh2.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
595045 (msh2.L)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
595045
NCBI-ProteinID:
XP_018118021
Xenbase:
XB-GENE-977522
UniProt:
A0A1L8G6D6
A0A974CV64
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Position
5L:complement(5952152..6022970)
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AA seq
932 aa
AA seq
DB search
MAVQPKEKLSMDSGAENGFLHFYQSMPEKPDTTVRVFDRNDYYTVHGGDALFAAKEVFKT
NGVIKYLGSGNKKLESVVLSKMNFESVVKDLLLVRQYRVEVYKNKSGGKYSKENDWQLAF
KASPGNLTQFEEILFGNNDMSTAVGVVGIKLVSSEGQRLVGVGYVDSTLRKLGVCEFPDN
DQFSNLEALLVQIGPKECVMPGGETAGDMGKLRQIVKRGGILITDRKRAEFSTKDSVQDL
NRLLKAKKGEQVTSAALPEMEKQVAMSALAAVMKYLELLSDESNFGQFVMTNFDLSQYMK
LDNAAVGALNLFPGSAEDTSGTQSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRVEERLN
LVEAFVMDVELRQCLQEDLLRRFPDLNRLAKKFQRQTANLQDCYRLYQAVNHLPTVVQAI
EKYEGTHQMLLLAVFATPLSDLSSDFSKFQEMIETTLDMDQVENHEFLVKASFDPNLTEL
REKMDELEKNMQGALGGAARELGLDAGKSIKLESNSQIGHYFRVTCKEEKALRNNKKFTT
IDIQKNGVRFTNSKLSSLSEEYMRNREEYEEAQNAIVKEIITISAGYVDPIQTLNDIIAQ
LDAVVSFAHVSNSAPVPYVRPVILEKGQGRIVLHSARHPCIEMQDDVAFIPNDITFEKEK
QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAQVSIVDCILARVGAGDSQLKG
VSTFMAEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIKAFCMFA
THFHELTALADQVPTVNNLHVTALTTEDTLTMLYRIKKGVCDQSFGIHVAELANFPKHVI
ETAKEKALELEEFQYVGNPDDCDDEPARKRRCEEKEEGEKIIQDFLSRVKALPLTEMSEE
EIKIKLKQFRADVLAKNNRFVSEVISRTKTGL
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgcagcccaaagagaagttgtctatggacagcggggccgagaatggcttcctt
cacttctaccagtccatgcccgagaagcccgacaccaccgtgcgagtgtttgataggaac
gactactacacggtgcacgggggagacgcgctgtttgcggccaaggaagttttcaagacc
aatggggtgatcaagtacttgggatcaggaaacaagaaactggagagtgtggtgctgagc
aaaatgaactttgagtctgtagtgaaggatctgctgctggttcgtcagtatcgtgtagaa
gtttataaaaataaatctggaggcaaatactctaaggaaaatgattggcagttggctttt
aaggcctcgccaggtaatctcacacagtttgaggagattctattcggcaacaatgacatg
tctacggccgttggagtggtcggtatcaaactggtcagctctgaaggccagaggttggtc
ggggtcggttacgtggactctacactgaggaagctgggagtatgtgaatttccagataat
gatcagttctctaatctggaagctttgctggttcagattgggccaaaggaatgtgtaatg
cctggaggagaaactgctggagacatgggaaaactgaggcagattgtcaagagaggtggg
attctgataacagacagaaaaagggcagaattcagcacaaaagacagtgtacaagatctt
aatcgcctgcttaaagcaaagaaaggagagcaggtgaccagcgctgcattaccagagatg
gagaaacaggttgcaatgtcagccttggcggccgttatgaaatatctggagctgttatct
gacgagtctaactttgggcagtttgtgatgaccaactttgacctgagccagtacatgaag
ctagacaacgcggccgtgggggctctcaatctgttccctggatctgcggaagataccagc
ggcactcagtcattggcaggacttttaaataagtgcaaaactcctcaagggcaaagactt
gtcaatcagtggattaagcagcctctcatggacaagaacagagtcgaggaaaggttgaat
ttagtagaagcttttgtgatggacgtggaattaaggcagtgcctccaggaggatctgctc
cgtcgttttccggaccttaatcgcttggcgaagaaattccagagacagactgccaacctg
caggattgttatagactataccaggccgtcaatcaccttccgactgttgtacaagcaata
gaaaaatatgaagggacacatcagatgctgctgttggcagtgtttgcgacgcctctttct
gatctgtcgtcggacttctccaaatttcaagaaatgattgaaaccacattggatatggat
caggtggaaaatcacgagtttcttgttaaggcctcatttgatccaaacctgacggagctg
agagagaagatggatgagctggagaagaatatgcagggggccctcggtggtgctgcccgg
gagctggggctggacgctggcaaaagcatcaaactggaatcaaactcgcagattggccac
tacttccgcgttacgtgcaaggaggagaaggccttgaggaacaataagaagttcactaca
atcgacatacagaaaaatggggtcagatttaccaacagtaaactgagctcactaagtgaa
gagtacatgagaaaccgagaggaatatgaggaggcccagaatgctattgttaaagaaatt
ataactatttctgctggatatgtggatccaattcagacgctgaacgacatcattgcgcag
ttggacgctgttgtgagctttgcccacgtgtctaacagcgcgccagtaccgtatgtccgg
cccgttattctggagaagggacagggaagaattgtgctgcactcggccagacacccgtgt
atcgagatgcaagatgatgtggcgtttatacctaatgatattacatttgaaaaggagaag
cagatgtttcatattatcactggccctaatatgggtgggaaatcgacgtatatccgccag
actggtgtcatagtcctcatggcgcagatcggttgctttgtaccctgtgattctgcacaa
gtcagcatagtggactgtattcttgctcgagttggtgctggagacagtcagttgaaagga
gtttcaacatttatggctgagatgctagaaactgcctcgatactcaggtctgctacagag
aactctctgattatcattgatgaattgggtcgaggaacctccacgtatgatggttttggc
ctggcatgggcaatatccgaatacatttccactaaaatcaaggctttttgtatgtttgct
acccactttcatgaactaacagccctggctgaccaggtcccaaccgtcaacaatttgcat
gttaccgctctcaccacagaagataccctaaccatgctctaccgaataaagaaaggggtt
tgtgatcagagctttggaatccacgtggcagaacttgccaactttcctaaacatgttatt
gaaacggcaaaggaaaaggcgctggaattagaggaatttcagtatgttgggaaccccgat
gactgtgatgatgaacccgccaggaaaagacgctgcgaagagaaagaggaaggtgaaaag
ataatccaggatttcctctccagagtaaaagctttacccctgacagaaatgtcagaggaa
gaaataaagatcaagctgaagcagttcagagccgacgtcctcgcgaaaaataaccgtttt
gtcagtgaagttatttccagaaccaaaacgggattgtga
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