Xenopus laevis (African clawed frog): 734294
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Entry
734294 CDS
T01010
Symbol
msh6.L, msh6
Name
(RefSeq) mutS homolog 6 L homeolog
KO
K08737
DNA mismatch repair protein MSH6
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
734294 (msh6.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xla03400
]
734294 (msh6.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
734294 (msh6.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
734294
NCBI-ProteinID:
NP_001089247
Xenbase:
XB-GENE-986641
UniProt:
Q5FWN5
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All DBs
Position
5L:complement(5745089..5763605)
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AA seq
1340 aa
AA seq
DB search
MSKQKTLFSFFTKSPPVSSSTKSGKVSSSPTEADVPSSGGKKSSSSPKEGAKEKAAGAAA
RTPGGKAPKSAAPSTACDFNPGDLVWAKMLGHPWWPSLVYNHPKEGTHLRGKGKSLHVHV
QFFDDSPTRGWTGAKYIKPFSGSTAAETQKGGMFFSTKPEIKKAMKMADDAVTLDKQKRL
ELAVCMEPSDSEEDMEVEENSSASHDEEVKTKTPSRESKRKGQPKRRRIMIESDSDNEGS
DDEFKPEDSASSDEASSGVDEAGLSEPDSEAEDNSPVKVPLKRKRGIPDKASGPKKRLQN
EQSETPKRTSNVSTEAKLKLSSFSAPESFESQANTGGTGAVSIWEHEKFDWLQDGKRKDM
KRKRQTDADYDPSTLYIPDDFLNKCTPGVRKWWQLKSQNFDTVIFYKVGKFYELYHMDAV
IGVNELGLTFMKGTWAHSGFPEIAFGRFSDVLVQKGYKVSRVEQTETPEMMEARCKSMSH
PSKFDRVVRREICRIITKGTQTYSVLDGNPSESHSKYLLCFKEKMDDSSGQRRVYGVSFV
DTSVGKFHVGQFEDDRHCSRFRTLVAHFPPVQILFEKGNPSSDTKKVLKSCLSTSIQESL
QPTSQFWDASRTLKTLAEEAYFEKDFQPATGNGNLPSVLKSMTSESDSLALTPGEKCELA
LSALGACIYYLKKCLIDQELLSMANFEEYVPVDTDVEKAQTSSNFFAKTSRRMVLDGVTL
TNLEILQNGTNGSTEGTLLEKLDTCSTPFGKRLLKQWLCAPLCNPFSINDRLNAVEDLMA
LPGKVSEVSELLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAVMYEEITYSKKKIADFLS
TLEGFKVMREVISIMEDDVAHFKSSILKQIVCVKDKASHGRFPDLSAELKRWDTSFDHEK
ARKTGVITPKAGFDPDYDEALKDVKQAEQDLNEYLDKQRKRLGCKTVVYWGTAKNRYQME
IPENIADRNLPEEYTLKSTKKGFKRYWTKAIEKMFGDLVNAEERRDAALKDCMRRLFYNF
DKNYKEWQTAVECFAVLDVLISLSQYSQGGDGPVCRPEIVLQENGSPFLELKGSRHPCIT
KTFFGDDFIPNDILVGCKEEDSDDGSDEAHCVLVTGPNMGGKSTLLRQAGLQVVMAQLGC
YVPADSCRLTPVDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLLDELGRG
TATFDGTAIAGAVVKELSESIKCRTLFSTHYHSLVEDHSHSQSVRLGHMACMVENECEDP
SQETITFLYKFIKGACPKSYGFNAARLAHIPDEIIQVGHQKAREFESLTLSLKLFRELFL
ALDNGSPEGLALHKRLKLLQ
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcaaaaaaccctcttcagcttcttcaccaagtctccccctgtttccagcagc
accaagtccggcaaagtctcgtcttcccccactgaggccgatgttccctcctctgggggc
aaaaagtccagctcttcccctaaagagggagccaaggaaaaggcagcgggagccgcagcg
aggactcctggagggaaagctcccaaatccgcagcgcccagcactgcctgtgacttcaac
cctggagaccttgtttgggccaaaatgctgggtcatccttggtggccatctctggtctac
aatcacccaaaagaaggcacccacttaaggggcaaggggaagtcccttcatgtccatgtc
cagttttttgatgacagcccgacaagaggatggacaggtgcaaaatatatcaagcctttt
tcagggtccactgctgcagaaactcagaaaggaggcatgttttttagtaccaaaccagaa
ataaagaaagcaatgaaaatggcagacgatgccgtgacactagacaagcaaaagcgcctt
gaattggctgtgtgcatggaaccttcggattcagaggaggatatggaggttgaagagaac
tcttctgcaagtcacgatgaagaagtaaaaacaaagactccaagtcgggagagtaaacga
aaaggacagcccaaaagaagacgaattatgatagagtctgacagtgataatgaaggctct
gatgatgaattcaagccagaagacagtgctagtagtgatgaggccagcagtggggtggat
gaagctggactgtcagaaccagattctgaagctgaagacaatagcccagtcaaggtccca
ttaaagcgaaaaagagggatccctgacaaagcatctggcccaaaaaaacgcttgcaaaat
gaacaatctgaaacccccaagagaacaagcaatgtgtctacagaggccaagttaaagtta
tcctccttctctgcccctgagtcatttgaatcacaggcaaacactggtgggactggcgcg
gtttctatatgggaacatgagaagtttgattggctgcaagatgggaaaagaaaggatatg
aaacgtaaaaggcagactgatgctgattacgacccaagcaccttgtacattccagatgat
ttccttaataaatgtactccaggcgtgagaaaatggtggcagctcaaatctcagaacttt
gatacggttattttttacaaggttggcaagttttatgaactttatcacatggatgctgtc
attggggtgaatgagctgggcctgacattcatgaaaggaacgtgggctcattctggcttt
cccgagattgcttttggtcgcttttctgatgttctcgtacagaaaggctacaaagtatcc
agagtggaacaaacggaaacaccagagatgatggaagcccggtgcaagtcaatgtcgcat
ccaagtaaatttgacagggttgtaagaagagaaatatgcaggatcattactaaagggaca
cagacctacagtgtgttggatggtaatccatctgaaagccatagtaagtatcttctgtgc
ttcaaagaaaaaatggacgattcctctggtcaaaggagagtatacggcgtctcttttgtg
gacacctccgtagggaagtttcacgtcggtcagtttgaggatgaccgccattgttcacgc
tttagaactttggtggcccatttccctccagttcagatcttgttcgagaaaggcaaccct
tcttcagatacaaagaaagttttgaagagctgcctttcgacctctatccaagaaagcttg
cagcctacatctcagttttgggatgcctccagaacactaaaaacattagctgaagaagct
tactttgaaaaagactttcagcctgccactggcaatggtaacctgccgtctgttttgaaa
agcatgacttcagaaagtgactccttagcacttactcccggtgaaaagtgcgaattggct
ctttcggcacttggagcctgtatatattacctgaaaaaatgtcttatcgaccaagagctg
ctctccatggcaaactttgaagaatatgttcctgtggatactgatgtagaaaaagcccag
acttcaagtaatttctttgccaagacaagtcggcgcatggttcttgacggagtgactctt
acgaatctggaaatcctccagaatggaacaaacggttctacagaagggacgctgttggaa
aaactagacacctgctctaccccttttggcaagcgtctcttaaaacagtggctctgcgca
cccctttgtaatccattctccattaatgatcgtttaaatgcagtggaagatctcatggcc
cttcctgggaaagtgtctgaggttagcgagctcttaaagaaactgcccgatctcgagagg
ctgctgagcaagattcacagtattggttctccacttaaaagccagaaccatccagatagc
cgggctgtcatgtatgaggagatcacttacagcaagaagaagattgcagatttcttatct
accctggaggggttcaaagtcatgagagaagtgatcagtattatggaagatgatgttgct
cattttaagtcaagtattctcaaacagattgtttgtgttaaagataaagcttctcatggg
cgcttccccgatttatcggccgagctgaagagatgggatacgtcctttgatcacgagaaa
gcccgcaagaccggtgtgatcactccaaaagcgggtttcgatccggattacgacgaagcg
ttgaaagatgtcaaacaagccgagcaagatcttaacgagtatttggacaaacaacgcaaa
cgactcggctgtaaaaccgtcgtctattgggggacggccaagaaccgatatcaaatggaa
attcccgagaacatcgctgaccgcaatctgcctgaagagtacacgctaaaatccaccaaa
aaagggttcaagcgctactggaccaaggcaattgaaaagatgtttggagacctggtgaac
gcagaggaacgtagggatgccgcgcttaaggactgcatgaggaggctcttctataacttt
gataaaaactacaaggaatggcagactgctgtggaatgctttgccgtgttagatgttctg
ataagtttatctcagtacagtcaaggaggggacgggccggtgtgcagaccagagatagtg
ctacaggaaaatgggtcgccgtttttggagctgaaaggttcacgacacccctgcatcaca
aaaaccttttttggggatgatttcattccaaatgacattcttgttggctgcaaggaggag
gattctgatgacggcagtgatgaggctcactgtgtgctcgtcaccgggccaaacatggga
ggcaagtcgacccttttgagacaggcgggtctccaggttgttatggcccagttgggatgt
tacgtgccggcagactcctgcagactgactcctgtcgaccgggtcttcacacgactcgga
gcatctgacagaatcatggccggtgaaagcacgtttttcgtggaattgagtgaaacgtcg
agtatactgcagcacgcaacggaacattccctcgtgcttctcgatgaacttggaagaggc
acggctacatttgatggcacagctatagcgggtgcggttgtgaaggaactgtctgaaagc
atcaaatgccgaactttattttccacacactaccactccctggtggaggatcactctcac
agtcagtctgtacgtctcgggcacatggcttgtatggtggaaaacgaatgcgaggatccg
agtcaggagaccatcacgttcctttacaagttcattaagggggcgtgtcctaaaagctac
ggctttaacgctgccaggctggctcacattcctgacgaaattatccaggtcggccatcaa
aaagcaagagaattcgagagtcttaccctttccctcaagctcttcagagaactcttcctc
gcactggacaacggttcccccgagggcctcgctctccacaagcggctgaagttgctccaa
taa
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