Xenopus laevis (African clawed frog): 734306
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Entry
734306 CDS
T01010
Symbol
scaf8.L, rbm16, scaf8
Name
(RefSeq) SR-related CTD associated factor 8 L homeolog
KO
K13191
RNA-binding protein 16
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
734306 (scaf8.L)
03041 Spliceosome [BR:
xla03041
]
734306 (scaf8.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
734306 (scaf8.L)
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
734306 (scaf8.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
Motif
Other DBs
NCBI-GeneID:
734306
NCBI-ProteinID:
NP_001089259
Xenbase:
XB-GENE-919931
UniProt:
Q5FWL5
LinkDB
All DBs
Position
5L:54636713..54704918
Genome browser
AA seq
1271 aa
AA seq
DB search
MDAVKTFNTELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFVQKCKPEYKV
SGLYVIDSIVRQSRHQFGQDKDLFAPRFSNNIINTFQNLYRCPADEKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNTPGTPVTPVTPANIVQGIPDPWIA
QINNTDTLAAVAQILQSPQGQQLQQLVQSLHIQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAATSNPLNQLEQSVSLSKKLMDRFDFGDDSNQPEDPKKETQQIPLIPESVNNSIFHQ
LAEHLQQQNLEHLRQQLLEQQQHSTKVTAQENQDFMSESENSATPSQDDSQQPFLESESQ
MHTSMNMQQEDMDIEETMDGNEEIFEKEDKKIMKEERPRTRSKSRSRSPRKRRSRSRSGS
RKRKHRKRSRSRSRERKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVG
QVDKKATQQDLTNVFEEFGQIESINMIPPRGCAYVCMVHRQDSYRALQKLSSSSCKIGSK
IIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQESVNNEWKAQ
KSSAAVGAKESTPHIVTEAPTTIVASAPTPVVTTTTQSTVVQKNSAVSSQPEAYTQPVAV
LQIPVAPAVNLVPPAYPVSMTVPPPGYSALPPPPFMRASFNPSQPPPGFIPPPLPPPAIP
PPAISSALPAATQSTVTSNTGILAVQPPSPIIASLPHVNIPTRMTGMPLLDVQGLLSQTA
SARFTLLHPGIPPLPPPPRSMLPPGLIDPNIHPLPFPLGDIVSLPDRSFGVQGRLDSDTV
NLKEKRQSLPGNSIQEGDQDYRFPPVENRQNSCKPSTEKHESKTMPSTGNKEMQGVRGTD
ENVQARNADDDHEPQDMAVVDSSESQVKSMEETCVAHLSSDDLNEDERKPEADAFESLRR
PVQQEYDYKGTNILDAHDGQVRQPINDKKLFRGPTIDILPPFQRYPGDREMFVRPALGIR
DPFGMPYLETHDHFGRPSLENPFKHPLLDGRNHYGRPPMDGREHFGRPQPDIRENHGRID
STGKQLHFPLEKPWGHQEDFDERAHHSFTGFQGLKGFHDERHHHANFRQEHRNTPNWNRG
FEQATHRDFDDRRHSWERQVDRDERDFDFRREVNGKTFGRERESDNWVPPQPQPNVFEYF
PEATSTQNSSKPQVNGENTETSNEKETVSKSDDPELCEQKETSVKESEENDIKETETESQ
FVVESTETEGT
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgtcaaaacctttaacaccgagctatattcactgaatgactacaagccacct
atatctaaagccaaaatgacccagataaccaaggctgctattaaagccattaagttttac
aagcacgttgttcagagcgttgaaaaattcgtccagaagtgcaagccagaatataaggtt
tctgggttgtatgtcattgattcaattgtccgtcaatccagacatcagttcggtcaagac
aaggatctttttgcacctcgttttagcaataatataattaatacttttcagaatctgtac
cgttgtcctgctgatgagaagagcaaaattgtaagagttctgaatctctggcagaagaat
aatgtatttaaaagtgaaattattcagccacttcttgatatggctgctgggatccctcct
ccagttgtcacaccagtcttacccagtactactgctgcaatgagcaacactccaggaaca
ccagtaaccccagttacaccagcaaatattgttcagggaatacctgatccgtggattgca
cagataaacaacacagatacccttgctgctgtggcacagattctgcagagccctcaggga
caacagctccaacagcttgtacagtctttgcacatccaacagcagaagcctcaaccttct
ctcctacaagcactggatgctggtcttgtggttcaactgcaggcacttacagctcaactt
acagcagcggctgctacttctaatcctctcaaccaactagaacaaagtgtttctcttagc
aagaaattaatggataggtttgattttggagatgactctaaccagccagaagatcccaaa
aaggagacccaacaaatccctctgattcctgaatctgtgaataactcaattttccatcaa
cttgcggaacatttgcagcaacaaaatcttgagcatcttcgccagcaattactggagcag
cagcagcattctacaaaggtaacagctcaggaaaatcaggacttcatgtctgaatctgag
aactctgcgacaccttcccaggatgacagccaacaaccatttttggagtctgaatcacaa
atgcatacctccatgaacatgcaacaagaagatatggacattgaagaaacaatggatgga
aatgaagagatatttgaaaaagaagataagaaaataatgaaagaagaaagacctaggaca
cgttcaaagtctcgctcaaggtcaccgaggaaaagacgatcgcgatcaaggtctggctcc
aggaagcgcaaacatagaaaacgctcacggtcacggtcaagggagagaaaacgcaaaaca
tcccgctcatattcaagtgaaagaagggcaagagagcgagagaaagaacgacagaaaaaa
ggacttcctcctatcagatctaaaactcttagtgtctgcagcaccacactctgggttggt
caggttgacaaaaaagccacacagcaggatttgaccaatgtatttgaagaatttggacag
attgaatcaataaatatgattcccccaaggggctgcgcatatgtctgcatggttcataga
caagattcctatcgagcacttcagaaacttagttctagctcttgtaaaattggatccaaa
atcatcaagattgcttgggctttgaacaaaggcgtaaaaactgaatataagcaattttgg
gatgttgatcttggtgtaacatatataccttgggaaaaggtcaaggtggatgacttagaa
ggatttgctgaaggtggaatgattgatcaggaaagtgtgaataatgagtggaaagcgcag
aaaagttctgcagcagtaggtgctaaagaatccacacctcatattgtcacagaagccccc
actaccattgtcgcctctgctcccactccagttgtcaccacaacaacccagtctacagtt
gttcagaagaattctgctgtatcctcacagcctgaggcatatactcagcctgttgcagtt
cttcagatcccagttgctccagctgtaaacctagttccaccagcatatcctgtctcaatg
actgtacctccaccaggctattctgcacttccaccacctcctttcatgagggcttctttt
aatccttcgcagccaccaccaggttttattccaccacctcttcctccacctgctattcct
cctccagctattagctcagcacttccagcagccactcaaagtacagtgaccagcaacact
gggatattagctgtgcaaccgccatcacctattatagcaagcttgcctcatgtaaacatc
cctactcgaatgacgggtatgcctttgttagatgttcaagggttactttcacagacagca
tcagcaagatttactttgttacatccagggatacctccacttccaccaccaccaaggagt
atgctccctccaggactgattgacccgaatattcatccattgcctttccctctaggggat
attgtttcacttcctgacagatcttttggagttcaaggcagattagattctgatactgtt
aatctaaaagaaaagaggcagtctctgccaggcaatagtattcaggagggggatcaagat
taccgttttcctccagttgaaaatcgtcaaaactcatgtaaaccatctacagaaaaacat
gaaagcaagacaatgccaagtacaggtaacaaagaaatgcaaggtgtaaggggtacagat
gaaaatgttcaagcaagaaatgcagatgatgaccatgagccacaagacatggccgttgta
gattcctctgaaagccaagtaaaatctatggaagagacttgtgtagctcatttatctagt
gatgatttaaatgaggatgaaaggaagcctgaagcagatgcctttgaaagtttaagacga
ccggttcaacaagaatatgactataagggaacaaatattttagatgctcatgatggccaa
gtcaggcaaccaataaatgacaaaaaactgtttagaggcccaacaatagacatactgcca
ccatttcaaaggtatccaggtgatagagagatgtttgttcggccagctttagggataaga
gatccctttggaatgccatatttagagacacatgatcattttggcaggccttctttggag
aatccttttaaacaccctcttttagatggcagaaaccattatgggaggccaccaatggat
ggtagagagcattttggaagaccacaaccagatataagagagaaccatggaagaattgat
agtactgggaagcaattacatttcccattagaaaaaccatgggggcatcaggaagatttt
gatgaaagagcccaccactctttcactggttttcaaggactaaaaggttttcatgatgaa
aggcatcatcatgcaaactttaggcaggagcatcgaaatactccaaattggaacagaggg
tttgaacaagctacacatagggattttgatgaccgtcgacactcatgggaaagacaggtt
gatagggatgaacgagattttgatttccgtagagaagttaatggtaaaacttttggaaga
gagagagagtcagacaactgggtgcctccacagcctcagccaaatgtttttgagtatttc
ccagaggctacttctactcaaaacagtagcaaacctcaagttaatggagaaaatacagag
actagcaatgaaaaagaaactgtaagcaaatctgatgatcctgaactctgtgaacagaaa
gaaacatcagttaaagaaagtgaagagaatgacatcaaggaaactgagacagaaagtcaa
tttgtggttgaaagcacagagactgaagggacataa
DBGET
integrated database retrieval system
