Xenopus laevis (African clawed frog): 734721
Help
Entry
734721 CDS
T01010
Symbol
upf2.S, hupf2, rent2, smg-3, upf2
Name
(RefSeq) UPF2, regulator of nonsense mediated mRNA decay S homeolog
KO
K14327
regulator of nonsense transcripts 2
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
734721 (upf2.S)
03015 mRNA surveillance pathway
734721 (upf2.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
734721 (upf2.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
734721 (upf2.S)
mRNA cycle factors
P-body specific factors
734721 (upf2.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1722
Motif
Other DBs
NCBI-GeneID:
734721
NCBI-ProteinID:
NP_001089661
Xenbase:
XB-GENE-6255295
UniProt:
Q498G1
A0A974HRH0
LinkDB
All DBs
Position
3S:complement(68897557..68942900)
Genome browser
AA seq
1264 aa
AA seq
DB search
MPAERKKPAGMEEKESPSSPRDKECTEKKATSSKDRVKDEPKACTKRDQSKASEEKKKQT
DEDKQRKEDKECKTKEEDQVKADDEQMNTDGKNQDDEMKKKQEEEEANQREAAALQIKEK
DEANQLHQEAWERHHTRKELRSKNQNAPENRPEESFFSRLDSSLKKNTAFVKKLKTITEQ
QRDSLSHDFNSLNLSKYIAEAAASIVEAKLKISDVNCAVHLCSLFHQRYADFAQSLLQVW
KKHFEARKEEKTPNITKLRTDLRFIAELTIIGIFTDKEGLSLNYEQLKNIINADRETHTH
VSVVISFCRHCGDDIAGLVPRKVKCAAEKYNLNFPPSEIINPEKQQPFQNLLKEYFTSLT
KHLKRDHRELQNIERQNRRILHTKGELSEDRHKQYEEFATSYQKLLASCQSLADLLDENM
PELPQDKPAPEEHGPGIDIFTPGKPGDYDLEGGIWEDEDARNFYENLIDLKAFVPAILFK
DNEKSSQSKETGKDNVKDTKEKDVPTTEELELELETLDINDDGIEMEGAEDAEDLTKKLL
DEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRAL
FIVPRQRLDLLPFYARLVATLHPCMSDIAEDLCSMLKGDFRFHVRKKDQINIETKNKTVR
FIGELAKFKMFNKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSSDSHLRTSVLL
EQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTT
EKVLRQMRKLSWQDLEVKNYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDG
VLEDIRLGMEVNQPKFNQRRISSVKFLGELYNYRMVESAVIFRTLYSFIFFGVNSDGSPS
PLDPPEHLFRLRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYFWWKKSLDVWTKDYPF
PIDIDYMISDTLELLRPKMKLCVSLNESVRQVQDLEREFLTKLGLMNDKESKHSMTEGDL
VYEDDDEEEEGGAETEEQSGNESEMNEQEEDASENEEDEREEEEEENTDYMTDSNKENET
DEENNEVMIKGGGIKHVPCAEDEDFIQALDKMMLENLQQRSVESVKVHQLDVAIPLHLKS
QLKKGPALSIAEVDTESGDTMPFVMLTRRGNKQQFKILNVPMSSQLAANHWNQQQAEQEE
RMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTG
GRRR
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagaacgcaagaaaccagcaggcatggaagaaaaggaatctccatctagccca
agggacaaagaatgtactgagaagaaagccacaagcagcaaagatagggttaaggacgag
ccaaaagcatgcaccaaaagagatcaatcaaaggcttctgaggaaaaaaagaagcaaact
gatgaggacaagcagagaaaagaagacaaggagtgcaaaacaaaagaggaggatcaagtg
aaagcagatgatgagcagatgaatactgatggaaaaaaccaagatgatgaaatgaagaag
aaacaggaagaagaggaggctaatcagagagaagctgctgcattacaaatcaaagagaag
gatgaagcaaatcagttacaccaagaagcttgggaacggcaccacactaggaaggagctt
cgcagcaaaaatcagaatgcccctgagaaccgacctgaggagagtttcttcagcaggctg
gactctagtttgaagaagaacactgcctttgtgaagaaactcaagaccattactgaacag
caaagagattcattgtcccatgacttcaacagtctcaacctcagcaagtacatagctgag
gctgctgcctccattgtagaggctaagttaaaaatatctgatgttaactgtgctgtgcat
ttgtgttctcttttccaccagcgatatgctgacttcgctcagtcacttcttcaagtatgg
aagaagcattttgaagcccgcaaagaggaaaagactcctaatattactaagctgagaaca
gacttgcgctttattgcagagctaaccatcattggcatctttacagataaagaaggcctt
tctctcaattatgagcaacttaaaaacataatcaatgctgatcgtgaaacccacacacat
gtttcagtggtaatcagtttctgccggcattgtggagatgacattgcaggcctagtgccc
agaaaagtgaagtgtgctgcagaaaaatacaatcttaattttcctcctagtgaaattatc
aacccagagaaacaacagcctttccagaatttgctgaaagagtacttcacatcgctgacg
aaacatttgaaaagggaccacagagagttacaaaatatagagcgtcagaacaggcgcatt
cttcatactaaaggggaactaagtgaagacaggcacaagcaatatgaggagtttgcaaca
tcttaccaaaagctgttagccagctgtcaatcacttgcagatctgctggatgaaaatatg
ccagaacttcctcaggacaaacctgcaccagaggaacatgggcctggcattgatatcttc
acacctggaaaacctggagattatgatttagaaggaggcatttgggaagatgaggatgcc
cgcaacttctatgagaatctgattgatttgaaagcttttgtcccagccatcctatttaag
gataatgagaaaagttctcagagtaaggaaactggcaaagacaatgtcaaagatactaaa
gagaaagatgtgcccacaacagaagagttagagctggagttagagactttagatattaat
gatgatggcattgaaatggaaggtgctgaagatgcggaagacctgacaaaaaaacttctg
gatgaacaagagcaagaggatgaagaggcaagcactggctcccatttgaaactaattgta
gatgcttttattcagcagctgcccaactgtgttaaccgtgatctaatagataaggctgca
atggatttttgcatgaacatgaatacaaaagctaataggaggaaattggtcagagcactt
ttcattgttcccagacagagactggatcttctcccattctatgccagactagtggccacc
ttgcacccttgcatgtctgatattgcagaagacctttgttccatgttaaaaggggatttt
cgtttccatgttagaaagaaggatcaaatcaacattgaaacaaagaacaagactgttaga
ttcattggagaacttgcaaaatttaaaatgttcaacaaaacagatacattgcattgctta
aagatgctgttgtcagacttctcacatcaccacatagaaatggcatgcactctactggaa
acttgtggaagatttcttttccgatcttcagattctcatttgcgcaccagtgtcctgctg
gagcaaatgatgcgcaagaagcaagcaatgcacttggatgcacggtatgtcacaatggtt
gagaatgcctactattactgtaacccacctccagctgaaaaaacggtgaaaaagaagcga
cctccgctacaagaatacatccgaaaacttctttataaagacctttctaaagtcaccact
gaaaaggttttgaggcagatgaggaagttgtcttggcaggatcttgaagtgaaaaactat
gtcatttgctgcatgatcaacatttggaatgttaaatacaacagcattcattgtgtagcc
aatctattggcaggactggtgctttaccaagaggatgttggaatacatgttgtagatgga
gtgttagaagacatacgccttgggatggaggttaaccagccaaaatttaatcagaggagg
ataagcagtgtaaaatttcttggggagctttacaactacaggatggttgaatctgcagtt
atatttcgcacactttattcatttatcttctttggagtaaactctgatggaagccccagc
cctcttgatccccctgaacacttattccgccttagattagtttgcactatccttgacact
tgtgggcagtattttgaccgtggatccagcaaaagaaagcttgattgttttcttgtttat
tttcagcgttatttttggtggaagaagagtcttgatgtgtggacaaaagattacccattc
ccaatagatattgattatatgataagtgataccttggagcttctgaggccaaagatgaag
ctttgtgtctcactgaatgaatctgtccgccaagtacaggatttagagcgggagtttttg
acaaaactaggtctaatgaatgataaggaatcaaaacattccatgacagaaggagatctg
gtatatgaagatgatgatgaggaagaagagggtggggcagagacagaggagcagtctggc
aacgaaagtgaaatgaatgaacaagaagaagatgcttctgaaaatgaggaggatgaaaga
gaagaggaggaagaagagaatacagactatatgactgactcaaacaaagaaaatgagaca
gatgaagaaaacaatgaggttatgattaaaggaggtggaattaaacatgtaccctgtgct
gaagatgaagactttattcaagcccttgacaagatgatgctagaaaatcttcagcaacgt
agtgtagagtcggtgaaggtgcaccagttagatgttgctattcctctgcatctgaagagc
cagttgaaaaagggaccagcactaagcattgccgaagtagacacagaatctggggacact
atgccatttgttatgcttacaagaagaggtaacaaacagcagtttaagatcctcaatgta
cctatgtcctcccaactggctgcaaatcactggaatcagcagcaagctgaacaagaagag
aggatgaggatgaagaaactcacactagatatcaatgagcgtcaggagcaagaagattac
caagaaatgttgcagtcattggctcagcgcccagcacctgccaacacaaaccgagagcgc
aggcctcgataccagcatccaaagggagcacctaatgcagatctcatcttcaaaactggg
ggcaggagacgttga
DBGET
integrated database retrieval system
