Xenopus laevis (African clawed frog): 734892
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Entry
734892 CDS
T01010
Symbol
taf5l.S
Name
(RefSeq) uncharacterized protein LOC734892
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
734892 (taf5l.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
734892 (taf5l.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
734892 (taf5l.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
734892 (taf5l.S)
Coactivators
SAGA/TFTC/STAGA complex
734892 (taf5l.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
734892 (taf5l.S)
STAGA complex
734892 (taf5l.S)
TFTC complex
734892 (taf5l.S)
SAGA complex
734892 (taf5l.S)
SLIK complex
734892 (taf5l.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
TFIID_NTD2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_SCAP
RMC1_N
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_EIPR1
PROPPIN
Beta-prop_IP5PC_F
WD_LRWD1
Beta-prop_DCAF12
TetR_C_22
Motif
Other DBs
NCBI-GeneID:
734892
NCBI-ProteinID:
NP_001089826
Xenbase:
XB-GENE-17344630
UniProt:
Q32NS1
A0A974CQU6
LinkDB
All DBs
Position
5S:44336558..44343738
Genome browser
AA seq
588 aa
AA seq
DB search
MKRVRAEQIQLAVTCYLKRRHYIDIEGSLKPGLRLCQTAEEMAANLTVQAESSCTNAISS
VPSSADAHQYEVQFARLRNFLSDADSPQSQEVTTLLYPLFVYLHLDMVQNSLKSAVDSFY
SRFHGMFLQHPGQRDIVEQLQTTMTMQDIHSNCKLRAFLDNKYVVGLQEDSYHYLLRFLQ
SDNNTALCKALALHIQLDVKPVKRTEYQLYNSMGSSSRGENNSLDQSDVPTPILQNEAAL
DQLQDCIKKVKDGPPSLTTISFYAFYNTEQLLNAAEISPDSRLLAAGFDNSCVKLWSLKS
KKLKAEPHRVDVSRIRLACDVLEEEEDDQAGSEMKILRGHSGPVYRTCFLSDSSGLLSCS
EDTSIRYWNLESYTNTVLYQGHTYPVWDLDVSPCSLFFASASHDRTGRLWCFDRTFPLRI
YAGHLSDVDCIKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLTLAFSPNGK
YLASAGEDQRLRLWDLASGTLYKELRGHTDNISSLTFSPDSNLIASGSMDNSVRVWDIRN
SYCNTPSDGSSSELVGVYTGQTSNILSVQFMACNLLMVTGIAHESQEH
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagtacgcgcagaacagattcagttggctgtaacgtgctacctcaagaggcgt
cactatatagatatcgaagggtccctaaaaccaggattgagactttgccagacagccgag
gagatggcagctaatctgacagtccaagcagaatccagctgtacaaatgcaatatcttca
gttccctccagtgccgatgcacatcagtatgaagtgcagtttgcaaggctacggaatttt
ctttcagatgctgattcccctcaaagccaagaggttacaacgctgctttatcctctgttt
gtatatctccatttggacatggtccaaaacagcctgaaaagcgcagtggatagcttctac
agtcgtttccatggtatgttcttgcaacatccaggtcagagggacattgttgagcagcta
caaaccaccatgacgatgcaagatatccactccaactgcaaactgagagcatttcttgat
aacaaatatgtggtcggccttcaagaggacagctaccactaccttttacgctttcttcaa
agtgataacaacactgctttgtgtaaggcgctcgctcttcacattcaactagatgtgaag
ccagtaaagcggacagagtatcagctgtacaacagcatggggtcatcctctcgaggagag
aacaacagccttgaccaatccgatgtgcccactccaattctgcaaaatgaggcagctcta
gatcaattgcaagactgcataaagaaagtaaaagatggtccaccatcactcacaactatc
agcttctacgcattctacaacactgaacagcttttgaatgcagctgaaatttctcctgat
agcagactgttagctgctggatttgacaactcctgtgtgaaattatggagcttaaagtct
aagaagctgaaagcagaacctcacagagtggacgtgtcccgtatacggcttgcttgtgac
gtcttggaagaggaggaagatgaccaagctggctcagaaatgaagatacttcggggacac
agtggaccagtgtacagaacctgttttctgtcagacagttcaggacttttatcttgttca
gaggatacatccatacgatactggaatcttgaaagctataccaatactgtcttgtatcag
ggtcatacatacccagtttgggatttggatgtaagtccttgcagtctgttttttgccagc
gcatctcatgaccgcactggtagactctggtgttttgaccgaacattcccactgaggata
tacgccgggcacctgtctgatgtagattgcataaagttccaccccaactcaaattacctt
gccacaggatccactgacaaaactgtgagactgtggagcactcagcagggaaattctgta
aggcttttcacaggacatcgtgggccagttctcactcttgccttttcacctaatgggaag
tacctggcctccgctggtgaagatcagcgcctgaggttatgggacttggcatcagggaca
ctatataaggagctccgaggacatacagacaatattagcagtttaaccttcagtccagac
agcaacttgattgcctctggatccatggataattccgttcgtgtgtgggatattcgaaat
tcctactgtaataccccctcagatggctcttctagtgagctggttggtgtttacactggg
caaacaagcaacattttgagtgtgcagtttatggcatgtaacctactaatggttacgggg
attgcccatgagagtcaagaacattag
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integrated database retrieval system
