Xenopus laevis (African clawed frog): 734970
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Entry
734970 CDS
T01010
Symbol
snw1.S, bx42, ncoa-62, prp45, prpf45, skiip, skip, snw1
Name
(RefSeq) SNW domain containing 1 S homeolog
KO
K06063
SNW domain-containing protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
xla04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
734970 (snw1.S)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
734970 (snw1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
734970 (snw1.S)
Spliceosome [BR:
xla03041
]
Complex B
Other components
Prp19-related factors
734970 (snw1.S)
Complex C
734970 (snw1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
DUF4718
Motif
Other DBs
NCBI-GeneID:
734970
NCBI-ProteinID:
NP_001089903
Xenbase:
XB-GENE-6254711
UniProt:
Q2VPI1
A0A974H513
LinkDB
All DBs
Position
8S:25491982..25506948
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AA seq
535 aa
AA seq
DB search
MALASFLPAPTQLSQDQLEAEEKLRAQKSRQTALVSSRREPPPYGHRKGWVPRSLEDFGD
GGAFPEIHVAQYPLDMGRKKKMSNALAVQVDAEGKIKYDAIARQGQSKDKVLFSKYTDLV
PKEVMDEDDPELQRPDEEAIKELTEKTRQALDKSVSQKIAAAMPVRAADKLAPAQYIRYT
PSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPHGPPSPPATVMHSPSRKMTVK
EQQEWRIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKARE
AVEMRAQVERKMAQKEKEKKEEKLRELAQIARERRAGIKSHTEKEDGEAKERDDIRHERR
KERQHERNISRAAPDKRSKLQRNEERDISEQIALGIPNQRTSSEIQYDQRLFNQSRGMDS
GFAGGEDEVYNVYDQPWLGNKKLAQNIYRPSKNTDNDVYGDDLDTLVKTNRFVPDKDFSG
ADRRQRHEGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSGRAKDHDHDMKKRRKE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcgctagccagttttttgcctgctccaacacagttatcacaggatcagctagaggca
gaagaaaagctgagagcacagaaatctcgtcagacagctctagtgtcatcacggcgtgaa
ccacctccctatggccacaggaaaggatgggttcccagatccctcgaggattttggagat
ggcggtgcttttccagagatacatgtggcacaatacccactggacatggggcgaaaaaag
aaaatgtccaatgccttggctgtgcaggtggatgcagaaggaaaaataaaatatgatgct
attgctcgacagggacaatccaaagataaggttcttttcagcaagtacacagacctggta
cctaaagaggtgatggatgaagatgatcctgaactacaaagacctgatgaggaagctatt
aaagagctcacagagaagacaagacaggctctggacaaatccgtgtcccagaagattgct
gcagcgatgcctgtacgggctgcagataaactggcccctgcacagtatattaggtacaca
ccctctcaacagggggtggcttttaactctggtgccaaacagagggtgattcggatggtg
gagatgcaaaaggaccccatggagccacctcgattcaaaattaataagaaaattccacat
ggacctccatctcctccagcgacagtaatgcattcccccagcagaaagatgactgtcaag
gaacagcaagagtggagaatccccccatgtatttctaactggaagaatgccaagggttat
accatcccactagacaagcgtttggctgctgatggccgagggctgcagactgttcatatc
aatgagaactttgctaagcttgcggaagccttgtacattgctgacagaaaggctcgtgaa
gctgtggagatgagggcccaggtggagcgcaagatggcacaaaaggagaaggagaaaaaa
gaggaaaaacttagggaattggcacagattgcaagagaacgcagagctgggatcaagtcc
catacagaaaaagaggatggagaagccaaagagagggatgatattcgacatgagagacgc
aaggaacggcaacatgaacggaacatatctagggcagccccagacaagaggtccaaactc
caaaggaatgaagaaagagacattagtgaacagattgcgcttggaattcctaatcagagg
acatccagtgaaatccagtatgaccaacgacttttcaaccaaagcagaggtatggatagt
ggctttgctggtggagaggatgaggtatataacgtgtatgaccagccatggttaggcaac
aagaaactggcgcagaacatctaccgtcccagtaagaatacggacaacgatgtttatggt
gatgacctggacacattagtgaaaaccaacaggtttgttcctgacaaggacttttctggt
gcagatcgcaggcagcgccatgaggggcctgtgcaatttgaagaggatccttttggtttg
gacaagtttttggaggaggctaaacagcatggaggatctaagcgtccctctgatagtggt
cgggctaaagatcatgaccatgatatgaagaagcgcaggaaggagtga
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