KEGG   Xenopus laevis (African clawed frog): 735185
Entry
735185            CDS       T01010                                 
Symbol
lsm1.S
Name
(RefSeq) uncharacterized protein LOC735185
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    735185 (lsm1.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    735185 (lsm1.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     735185 (lsm1.S)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     735185 (lsm1.S)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 735185
NCBI-ProteinID: NP_001090109
Xenbase: XB-GENE-17335420
UniProt: Q3KPZ8 A0A974D834
LinkDB
Position
3S:21060295..21069418
AA seq 133 aa
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKENDTPLHQVSIEEILEDQRVEQQSKNEAEKLKVQALKER
GLSIPRADTLDEY
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaattatatgcccgggaccgccagcctcatagaggatatagacaaaaaacacttggtt
ttactgagagatggaaggacccttatagggtatctaaggagcattgatcaatttgcaaat
cttgtgttgcatcagactgtggagagaatccatgttgggaagaagtacggtgacatacca
cgaggaatatttgttgtgcgtggagagaacgtggttctgctcggtgaaattgacctggag
aaagaaaatgatacccctctccatcaggtctccatagaggaaatcctagaggatcagcgc
gtagagcagcagagcaaaaatgaagctgaaaagctgaaggtacaggccctaaaagagcgg
ggcctgtccatccccagagcagacacactggacgaatactga

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