Xenopus laevis (African clawed frog): 779090
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Entry
779090 CDS
T01010
Symbol
pdcd11.L, alg-4, alg4, nfbp, pdcd11, rrp5
Name
(RefSeq) programmed cell death 11 L homeolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xla03009
]
779090 (pdcd11.L)
Ribosome biogenesis [BR:
xla03009
]
Eukaryotic type
90S particles
Other 90S particles
779090 (pdcd11.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
OB_RRP5_4th
Suf
HAT_Syf1_CNRKL1_C
TPR_14
Spt6_S1
OB_RRP5
TPR_19
TPR_12
ARM_TT21_5th
UTP6_C
TPR_15
ARM_TT21
HAT_Syf1_M
TPR_CcmH_CycH
TPR_6
ARM_TT21_4th
DUF2642
Motif
Other DBs
NCBI-GeneID:
779090
NCBI-ProteinID:
NP_001122095
Xenbase:
XB-GENE-967222
UniProt:
B3DLK9
LinkDB
All DBs
Position
7L:complement(23884292..23926943)
Genome browser
AA seq
1812 aa
AA seq
DB search
MEESFPRGGSQKKAEQKAVLKRPKENDGNLFSTHHEEEPEIKKNKKVSREKPKAVGLEKR
TTSTKEIVEIPLYSKLSVGMLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLIS
EQVEKDDPLEALVPLSELYSPGMLVRCAISSLETTASGFPSVKLSVNPKHVNKALNTGSI
KTGMVLSGCVSSVEDHGYLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVE
EVKNEGKIVRLSIIQNDVASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSY
TGFVDFLHFEPKKIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWV
GSVLDNCVVQTLFKNAGAVFELEGGNLGFAFKHHLSASKQPHFEKFKKGTTHKGRITDFS
PMDEMHILSLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHF
ADVLLKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLIT
HGFIVAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQ
QLLLSFRITEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPEESPAFI
PKMHLSDHVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVIS
EVQTGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVI
KMDEEKKRFLLTLKMSECAPDDYSIEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTL
IAGQKLTLVVENAEENGPVQFSAGSISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDML
TLHVHVSLNQTLLKKKQNVPKMNSSHSADVQHVAEEFAVVSLADSAHLIAVPVSSHLNDT
FRFESEKLKVGETISVILKTTTVNEHGLLLAVQNKAASKTSKNLGRTTQSAMRVRGAISH
GLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDETPQGCFPTSKLNPKQEVTCR
VIGGREVKTHRYLPITHPDFIHSVPELSLLPELINTDNVPKPRALKTFNPGDKVTCYVNK
FNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRPEKLFKNGQALSATVVGPDAVHKHLC
LSLTGIHSLEEGAVTVACVTKVVKGSGLTLSLPFGKTGNANMFHLCDKYAEASLEKFTPG
KFVRCAILSNSKIVKVSLRQSRVNQQAQSSAVDEDIASIDSLEEGQLVSGFVSAITENKG
VFFRLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKHVELSLLPT
DTGKPDVVPESAGFSKRKNKASKKTPTKRKRENLEKGSQDTGLKKKKSHKSIEDDDSGVE
VYCREEDAEDKTKKTQQQSQEQTSSQASVSRLQVSSGFLWDVSLNTLKTSLAGANESSSD
SDEEEDEQPKKKKTKKELAKEKKEAEKELSKKEATLLDSSRQPQSADDFDRLVISSPDSS
ILWLQYMAFHLHATEIEKARVVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLTK
AFERAVQYNEPLKVFQQLADIYIKSEKFKQAEDLYNTMLKRFRQEKSVWIKFATFLLKQG
QGDGTHKLLQRALKSLPEKDHVDVISKFAQLEFQLGDTERAKALFESTLSSYPKRTDLWS
VYIDMMVKHGSQKEVRDIFERVIHLSLAAKKIKFFFKRYLEYEKKHGSTESVQAVKEKAL
QYVESQSSLAAT
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagtttccctcgaggtggatcccagaaaaaagcagagcaaaaagctgtttta
aagaggcctaaggaaaatgatggcaaccttttctcaacccatcatgaggaagaaccggaa
atcaagaagaacaagaaagtatctcgtgagaagccaaaggctgttggtctagaaaaaagg
acaacatctactaaggaaattgtggaaattccactgtacagtaaactgagcgtcgggatg
ctgtttcttggttgtgtgaaacggaccaaagattttgagttgacagtgagtttaccatat
tgcttaacaggctatatccaagcgacaaacatttgtgacgcatatactaatctcatcagt
gaacaagtggaaaaagatgaccccctggaggcactagttcccctttctgagctgtacagt
ccaggaatgttagtaaggtgcgcaataagcagtttagagacaacggccagcggtttcccc
agcgttaaactgtccgtcaacccgaaacatgtcaacaaggctctgaacacaggatcaatt
aaaacaggcatggttttatctgggtgtgtatctagtgtagaagaccatggatatcttgtt
gacataggagtcgctggtactaaagcattcctgccacgtcaaaaagcgcaattattttta
agtcaagcagggcaagggtccttactcagagtaggggagtacctaaactgtgtggttgag
gaagtgaagaatgagggaaagatagtccgtctgtccataatccagaatgacgtggccagt
gcccttgcaactgtggaacagaactggaatctgaataatctattgccgggacttgtattt
aaagcacagatagagaaggtgatgcacaacaacatcactttgtctttcctttcatcgtac
acgggctttgtggatttcttgcactttgaaccaaagaaaatcggttcctacaaggaaggg
caggaagtcaaagcctgtattttgtggcttgatccatccacaaagactatcagacttacg
ctccgtcagtgttttctgcagccagggaacaccctgccccagctcaccagtgactgggtt
ggctctgtgcttgacaactgcgtggtgcaaacattgtttaagaatgctggagctgttttt
gaactggaaggaggaaacctgggctttgcatttaaacatcatctttctgcttctaaacag
ccacattttgaaaagttcaaaaaaggtaccactcataaagggcgaatcacagattttagt
cccatggatgagatgcacattctctctctaaaagagaaagtgattacaaatctcttcttg
cgccatgaagatatacaacctggacaggtgctggaggggacagtaaagtgcatggaagcc
gtaggaatggtggtacagatcactgaccatctcacaggtctcgtgcctaaactccatttt
gctgatgttctcctcaaacatcctgagaaaaagtacattattgggaacaagataaagtgc
aaggtcttgactgtggttacttgtgaacgaaagttgatcctgacaagaaagagaactctg
atgaagtcaacgttgcccgttctcgccagctatgaggatgcgcaaccaggcttaattacc
catggcttcattgtggccattaaagactacggatgccttgttaaattctataacgaggta
caaggcctagctccacgtcgtgagctgggctcgctgcaagagatttcctcgctggaagat
gccttttatagagggcaggtcattaaggttcaggtgctggagtgtaacccccaaacacaa
caattgctgttgtccttcagaataacggaggaggggcacactgaacaagaacaacgcttc
ctcaagaagataaaggcggtgaagttagatgttgggaagttggttgatatcagagtccta
tcgaagactgacaaaggagtgaacgttctcgtcctacctgaggaaagccccgctttcatt
cccaaaatgcacctctcggaccatgtgtcaaattgtgagctactctggcatacactgcaa
gaaggggacgatattcccggggccatgtgtcttagtagcctcaagggccacagtatatta
acaaagaaatctcttctgatttcctctgttgagaaaggatcgtgtgtaaaagtcatctcg
gaagtgcagacagggatgcacctgactggctttgtgaaaagtatcatgccatatggtgtc
tttgtggaattcccttacggcctgtttggattggtgcccatgtccgaaatatctgacaag
tttgtgaccaatatcagggaccactttgttgagggcaacactgtggttgccactgtaatc
aagatggacgaagagaagaagcggttcctgctgactctgaagatgtctgagtgtgctccc
gatgattattccattgaaggcctgttccttctgagccagtgtttcagtgaactgcagctc
atgaaagggctgctcgctaggaaaggagatccagaggacgagctaagtatctacacactg
atcgcaggacaaaagctcactttggttgttgagaatgcagaggagaatggtcccgtccag
ttcagcgctggcagcatttctggggctcagactgtatcagccacccagtatcacattgga
gataaagcactggtcgctggacagaaagtcaaagctgtggttttacatgttgatatgctg
acgttgcatgttcatgtatctctaaatcaaacgctgttgaaaaagaaacagaatgtgccg
aagatgaattcatcccactcagcggatgtgcagcacgtggcagaagaatttgctgttgtg
tccttggcagactctgctcatctaattgcggttcccgtgtcttctcaccttaatgacact
ttccgttttgagtctgaaaagctgaaggtgggagagaccatctccgtaattctaaaaaca
acaactgtgaatgaacacggccttttgctagcagtgcagaataaagctgcctcaaagacc
agcaaaaacctcggccgaacaacccagtcagctatgagggtccgtggtgcaatttcacat
ggtttgaaaattggagatctagtaactggaacagtgaaaagtataaagcccacacaagtg
accgtctccataaatgataacgtatttggctttatccatgtttcccaaataatggatgaa
accccgcagggttgtttcccaacctccaaactcaatccaaagcaagaggtgacttgtcga
gttattggcggaagagaagtgaagacccacagataccttccaatcacacatcctgatttc
atacattctgttcctgagttgagccttctcccagagttaattaacactgataatgttcca
aagccaagagcactgaaaacattcaaccctggtgataaggttacatgctatgtaaataag
tttaacacagagacaaaatatctagaggtggagatcacaccagaaatccgtgggagaatt
gagcttctgcttctttcccagacccccaagaacttaaagcgtccagaaaaactattcaag
aatggccaagccttgtctgcaactgttgttggaccggacgccgttcacaagcacctctgc
ctttcattaacaggtatccattcattggaggaaggagctgtgactgtggcgtgtgtgact
aaggtagtaaagggctccgggctgacactctccctcccgtttggaaagactggaaacgcc
aatatgtttcacttatgcgacaaatacgcagaagcttcattggaaaaattcacccctggg
aagtttgtcaggtgtgctatactgtctaattcaaagatagttaaggtttctctcaggcag
tccagggtaaatcaacaagcgcagagcagtgcagttgacgaggatatcgcttccatagat
agtctggaagaagggcagttggttagtggctttgtgagtgccattacagaaaacaaagga
gtgtttttcaggttatccagctttattgtgggacatatccagttccagaacgtcactagt
tattttgtttatgagccatctgcatacagtaactatatcccagaaggcaccctgcttaca
gccaaagtcctgtctatcgaccctgataagaaacacgtggagctttcgcttcttcccacc
gacaccggaaagcctgacgtcgtaccagaatctgctggattcagcaaaaggaaaaataag
gcgtcgaaaaagacaccgacaaaaaggaaaagggagaatttagaaaagggctcacaggac
actggtctaaagaagaaaaaatctcacaaatctatagaggatgatgacagtggagttgaa
gtttactgcagagaggaagatgcagaggataaaacaaagaaaacacagcagcagtcccag
gaacaaactagcagtcaagcatccgtttcaaggttgcaagtttcctctgggttcttatgg
gatgtcagcctaaacactctcaaaacgtctctggctggggctaatgagagcagctcggac
agcgatgaagaggaggatgaacagcccaagaaaaagaaaacgaaaaaagagctggcgaaa
gaaaagaaggaagcggagaaagaactgtctaagaaagaagctactttactggactccagt
cggcagcctcagtcagccgatgactttgaccggcttgtcattagttccccagacagctcc
atcctttggctccagtacatggcattccaccttcatgccacagaaatagagaaggcacga
gttgtggcagagcgggcgctcaaaaccatttctttcagagaggaacaggaaaagctcaat
gtgtgggttgcactgctaaacttggagaacatgtatggcactgaggagagcctcacgaag
gccttcgaacgagctgttcagtataatgagcctttgaaagtcttccagcagctggccgac
atctacatcaagtctgagaagtttaagcaagcagaggatctgtacaacacaatgctcaag
cgcttccggcaggagaagtctgtatggattaagtttgcaactttccttctaaagcaaggc
caaggagatgggactcacaaattactgcagcgtgcgctcaagagccttccggagaaagat
catgttgatgtgatttccaagtttgcccagttagaatttcagctgggagacactgagcgg
gccaaagccctgtttgagagcacgctgagcagctacccaaaacgtacagacctctggtct
gtttatattgacatgatggtgaaacatggcagccaaaaggaagtgagggacatttttgag
cgtgtgattcatctgagcttggcagctaaaaagatcaagttctttttcaagcgctacttg
gagtatgaaaagaaacatggaagcaccgagagtgtccaggccgtgaaagagaaagcgctg
cagtacgtggaatctcagagttctctggcggccacatag
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integrated database retrieval system
