Xenopus laevis (African clawed frog): 779091
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Entry
779091 CDS
T01010
Symbol
mbd1.S, cxxc3, mbd1, mbd1-a, mbd1-b, mbd1.L, pcm1, rft
Name
(RefSeq) methyl-CpG binding domain protein 1 S homeolog
KO
K11589
methyl-CpG-binding domain protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
779091 (mbd1.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
779091 (mbd1.S)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
779091 (mbd1.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
779091 (mbd1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CXXC
MBD
Motif
Other DBs
NCBI-GeneID:
779091
NCBI-ProteinID:
NP_001104183
Xenbase:
XB-GENE-6077786
UniProt:
A8WH36
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All DBs
Position
8S:26228609..26239279
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AA seq
626 aa
AA seq
DB search
MSEGWEDWPLLGPGWKRRISVRKSGASCGHIDIYYRSPTGEQMRSKIELAKYLGSSVDLS
LFDFRNGVIVDKGHCSPKKKKGSQRKSLPADGTVTLPHKMPRLSLPMPALEESEQNGTAE
KSVVRCHGCKVWFAGVEFGKSKINKWHCADCRASRRAFNKEQKVYKNAGCGTCDACKVTE
NCGHCTICLLRSHDPEFGSSWKCVRRRCLRVLRKSDDCGMCQGCCREDDCEGCSVCLDKM
HNPDIDIKEKCLLRRCMNKKLVHCSPDYKNNDTKKLLIKKPTFIKQKKKKKTDRKGQLLS
SRRQNRKCGECESCLQKDDCGKCDFCQDKPKFGGRNLKRQKCRWRQCLRFAMEKNIPAFH
RSSNNPVIIERMKQEAVAAEYEKVEVQQNQDTLLIVSPLRETFIKVEQINGQHCSSDERN
SSHMKNETSRLIKEETAERDVPHTEEITPLDLNRSIKTEEFITETDDIEEADDSTPVIME
IFSLSSYHTTGDLDKVLQEFMGELNEMPLPAHWEVLAHTGPNLQLVQRSRLSTMADTVIY
IQPGLLFHVIVKGHPVPSSHELYNNHPTRLTTVDDVVELICDLEAHQQCVGLLKPRHRSS
ECRVLVTCGGKCEECCKMPWLAGSNQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaggttgggaagactggcccttgttgggccccgggtggaaacgcaggatatcg
gtcagaaaatcgggtgcatcctgtggtcacatagacatctattatagaagccccacgggg
gagcagatgcgtagtaagattgagctggccaagtacttgggttcctctgtggacttgtcc
ctctttgacttcaggaatggggtgattgtagataaaggtcattgttcccccaagaaaaag
aaaggctcccagaggaagagccttcctgctgatggcactgtgacgctgccacacaaaatg
ccccgtctctccttgcctatgccggccctcgaagagagtgaacagaatggcaccgctgaa
aaatctgttgtgcgctgccatggctgcaaagtgtggtttgcgggagtggaattcggaaag
tccaaaatcaacaaatggcactgtgctgattgtagagcttccagacgagctttcaacaaa
gagcaaaaggtttataagaatgcaggttgtggcacatgtgatgcctgtaaggtgactgaa
aactgtggtcattgcactatttgtctcctgcgttcccacgacccagaatttggcagttcc
tggaagtgtgtcaggaggcggtgcctgcgtgttctccgcaagagcgacgactgtggcatg
tgccaaggctgctgtagggaggatgactgcgaaggctgctccgtctgtctagataagatg
cacaatcctgacattgacatcaaagagaagtgtctgctgcgccgctgtatgaacaagaag
ttggtgcattgttctcctgactataagaacaacgacacaaagaagctgctcattaagaaa
cccactttcatcaaacagaagaagaagaagaagacagatcggaaaggacagctgctttca
agccgccgtcaaaaccggaagtgcggtgaatgtgagtcctgccttcagaaggatgactgt
ggcaagtgcgacttctgtcaggacaagcccaaattcggtggtcgcaaccttaaacggcaa
aagtgtcgctggcgccagtgcctgcgatttgccatggaaaagaacatcccagcattccat
agatcatccaataacccggtcattatagagaggatgaagcaggaggcggttgctgcggaa
tatgagaaagtagaggttcagcagaaccaagatactctactcattgtatctccactcagg
gaaaccttcattaaagtggaacagataaacgggcagcactgctctagcgatgagaggaac
agcagtcacatgaaaaatgagacttccaggctgataaaggaggagaccgcggagagggat
gtcccgcacacagaagagatcaccccattggacctgaaccggtcaatcaagacagaggag
ttcatcacagagacagacgacattgaagaagcagatgacagcacgcctgtgatcatggag
atttttagcctgagctcgtatcacacaacgggagacttggacaaagttttacaggaattc
atgggggagctgaatgagatgccactgccagctcactgggaagtactggcccatacaggc
cccaatcttcagctggtgcagcgctccagactttccactatggctgacactgttatttac
atccagcctggactcctctttcatgtgatagtgaagggtcaccctgttccttcttcccac
gaactgtacaataatcaccccacccgtctcaccactgtggatgatgttgtggagctaatc
tgtgatctggaggcacatcagcagtgtgttgggctcttaaagcctaggcacaggtcttct
gagtgccgcgtgctggtgacgtgtggagggaaatgcgaagaatgttgcaaaatgccctgg
ctggcgggaagcaaccaatag
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