Xenopus laevis (African clawed frog): 779280
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Entry
779280 CDS
T01010
Symbol
rtcb.L, c22orf28, rtcb
Name
(RefSeq) uncharacterized protein LOC779280
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xla03016
]
779280 (rtcb.L)
Enzymes [BR:
xla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
779280 (rtcb.L)
Transfer RNA biogenesis [BR:
xla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
779280 (rtcb.L)
Prokaryotic type
tRNA splicing ligases
779280 (rtcb.L)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
779280
NCBI-ProteinID:
NP_001090369
Xenbase:
XB-GENE-974756
UniProt:
Q05AW6
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All DBs
Position
3L:6590490..6603262
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHNNCWRIRKGFVPNMQVEGVFYVNDPLEKLMFEELRNASRGGAAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEVQVVDEIYDE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARISS
DEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTPPDDLDMHVIYDVSHNIAKVEQ
HVVEGKEMTLLVHRKGATRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADLGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttacaatgacgagttacagtatctggacaagatccataacaactgctgg
cggatccgcaagggtttcgtgcccaacatgcaggtggaaggggtcttctatgtgaatgat
cctctggagaagctgatgtttgaggagctgaggaacgcgagccgcggtggagccgctgga
gggttccttcctgccatgaagcagatcggcaacgtcgcagctttacctgggattgttcac
agatccattgggctaccagatgtccactccggctatggatttgccattggaaacatggcg
gcatttgatatggaaaaccctgatgccgttgtctccccaggtggtgttggttttgacatc
aactgtggggtccgattgcttcgtacaaacctggatgagagtgacgtgcagccagtgaag
gagcagcttgcccagtccatgttcgaccatatccctgtaggggtcggatccaaaggggtc
atccctatgggagccaaggaccttgaggaagcccttgagatgggggtggactggtcgctg
cgagaaggctacgcctgggccgaggacaaggaacactgcgaggaatatggccgaatgctt
caggccgaccccagcaaggtctcctctaaagccaagaaacgaggcctgccccagctgggg
accctcggtgccggaaaccattacgccgaagtccaggtggttgatgagatttacgacgag
tacgccgccaagaaaatgggcatcgaccacaaggggcaggtgtgtgtcatgatccacagc
ggcagccgaggcttggggcatcaagtggcaacagatgctctggttgccatggagaaagcg
atgaagagggacaagatcacggtgaatgatcgacagttggcatgcgcccgcatttcctct
gacgaggggcaggattacctcaaaggcatggctgccgcgggcaactacgcttgggtcaac
cgctcctccatgaccttcctcaccagacaggccttctccaaagtattcaacacgcctccc
gacgacctggacatgcacgtgatctacgacgtgtcccacaacatcgccaaggtggagcaa
catgtggtggaggggaaggagatgactctgctggtgcacagaaagggggccacccgagcc
ttccctccccatcacccgctcattcctgtggattatcagttgactgggcagccggtattg
atcggtgggaccatgggaacctgcagctatgtcctcactggaactgaccagggcatgact
gagacgtttggcactacctgccatggtgctggtcgcgccctctccagagccaaatcaaga
agaaaccttgatttccaagatgtgctggacaaactggctgacctgggcatcgccatccgc
gtggcttccccaaaactggtcatggaagaggctcctgaatcgtacaagaacgtcacagat
gtagtgaatacctgtcacgatgccggcatcagcaagaaagccatcaagctgcgccccatt
gcggtcatcaaaggttga
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