Xiphophorus maculatus (southern platyfish): 102216606
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Entry
102216606 CDS
T02923
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102216606 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xma03400
]
102216606 (lig3)
Enzymes [BR:
xma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102216606 (lig3)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102216606 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
102216606
NCBI-ProteinID:
XP_014328100
Ensembl:
ENSXMAG00000011457
UniProt:
A0A3B5QD23
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All DBs
Position
11:complement(11926305..11943270)
Genome browser
AA seq
998 aa
AA seq
DB search
MQRHLIFLVQKTVCVGRQPFGTLIRFKQASALCRTFPISSTSYQRKSLASHIQHLQKRHA
PWTSIHRCFSEWPDMSEQRFLVEYAKRGTAGCKKCKDKIQKGVVRIGKVVPNPFSESAGE
MKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQEEDKELINKHVSDLMAKVNASPK
KKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTAAKAGSSGSSSSSSSPGLSTSPAAKAGS
GSALSTQLCDAQHKDCLFREFRKLCAMVAENNSYNSKTQIIEKFLKKGTGGDKFHGDLYL
TVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQEDMVRDLEQGDVSETVRIFFEESKCFP
PAAKSLLTIQEVDAFLMRLAQLTKEDEQQSELESIAKKCTSNDLKCIIRLIKHDLKMSAG
AKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATSGSGPRKLLTVEASLMTPVQPML
AEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNTFSYFSRSLKPVLPHKVAHFKEYI
PQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAKVGLFVFDCIYFNGVSL
MERPLCERRKFLDDNMVEVPNRILFSEMKHVTRAGDLAEMITRVIREGLEGLVLKDVKGS
YEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCT
VTKCSGGYDDAMLARLQKELDVIKISKEPGKIPSWLKIVKNYYPDFIIRDPEQAPVWEIT
GAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFRISKENCDFKVTAGPS
TSDDKGSSGGDSGGNSPSSSSSRSAPAKKTSSSTPTKPKAVKSKPRTPTSEASSAKKVKE
SVQSNGQNKASSQLLQPRNDKSLLDIFSGVKLFLPVSVQDFDRLRRYFVAYDGDLVPDYD
SASATHTLGDPEGGSRAQRVSPSWIWECIRKRRVVPPC
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcatcttattttcttggtacagaagactgtctgtgtgggccgacaacctttt
ggcacactaatccgatttaaacaagcttcagcgttgtgcagaacatttccaatttcatct
acctcttatcagcgaaaatccttagcatcccatatacaacaccttcaaaaaagacacgct
ccctggacttcaattcaccggtgcttttctgagtggccagatatgtcggaacaacgcttc
ctggtggaatacgccaaacgtggcacggcggggtgcaagaaatgcaaggacaagatccag
aagggcgtcgtgcgcatagggaaagtcgtgccaaaccctttcagcgagtctgctggcgag
atgaaagagtggtatcacgtgaagtgcatatttgagaagctggagagggcaagagccacg
acgaagaagatcgaggacctgacggagctggagggctgggaggagctgcaggaggaggac
aaagagctcattaataaacacgtttcagacctgatggccaaagtcaatgcaagtcctaaa
aagaaggtccaggccaagttgaacaccactggtcagcttatggcgccccctgctgaccct
tctgtcaatgctccgaggaagttttctggcttcacagctgcgaaggctggcagctccggc
agctccagcagctccagcagccccggactgtcgacgtccccggcggccaaagccggctcc
ggcagcgccctgtccactcagctctgcgacgcccagcacaaagactgcctcttcagggag
tttcgcaaactctgcgcaatggtggctgaaaacaacagctacaacagcaagacacagatt
atagagaagttcctgaagaagggcacaggaggagataaatttcacggagatctttacctg
acggtgaagctgctgctgccaggcgtggttaaaagtgtttacaacctgaacgataagcag
atagtaaaactcttcagccgcatattcaggtccaaccaggaggacatggtgcgagatctg
gagcagggcgacgtgtcagaaacggtgaggattttcttcgaggagagcaaatgttttcct
cccgctgccaagagcctcctaacaatccaggaagtagatgcgttcctgatgcgcctcgct
cagctcacaaaggaggacgagcagcagagcgagctggagagcatcgccaaaaaatgcacc
agcaacgacctgaaatgcatcatcaggctaattaagcacgacttgaagatgagcgctggc
gccaaacacgtgttggacgcggtagatccaaacgcgtacgacgccttcaaggcctcccgt
aaccttggcgacgtgatcgagagggttctgaggaaccagcaggatgccaccagcggctct
ggacccaggaagctcctgaccgtggaggcgtcgctcatgacgcccgtccagccgatgctg
gccgaggcgtgtaaatccatcgagtacgccatgaagaaatgtcccaacgggatgtactcg
gagataaaatacgacggcgagcgcgttcaggtccacaagaacggaaacaccttcagctac
ttcagccgcagcctcaagccggtgctgccccacaaggtggcccatttcaaagagtacatc
cctcaggccttccctggcggccacagcatgattctggacgctgaagtcctgctgattgac
acaaagaccagcaaaccgctgccgtttggcactctgggtgttcacaagaaagctgccttt
caagacgccaaagtgggtctgtttgtgttcgactgcatttacttcaacggtgtgagtttg
atggaaaggccgctctgcgaacgcaggaagttcctggacgacaacatggtggaagtccca
aacaggatcctcttctcagagatgaagcacgtcacgagggcaggagacctggcggagatg
ataactcgcgtcatcagagaaggactggaaggcctggtgctgaaagacgtaaagggaagc
tatgagccggggaagcgacactggctgaaggtgaagaaggattatttgaacgagggagcg
atggccgacacagcagacctggtggtgctcggtgccttctacggaaaaggatcaaacggg
ggcatcatgtctagctttctgatgggctgctacgacccggactcgaagaagtggtgcacg
gtgaccaagtgctccggaggatacgatgacgccatgctggcccgactccagaaggagctg
gatgtgatcaaaatcagcaaggaacccgggaaaattcccagctggttgaaaattgtcaag
aactattatcctgatttcattatccgtgaccctgagcaagcgccagtctgggagatcacc
ggcgcagagttttccaaatcagaaatgcacaccgccgacggcatctccatccgcttcccc
cgcatgacgcgaatccgcgacgacaaggactggaagacggccaccaacctgcaccagctc
agggagctgtttcgcatttcgaaggagaactgcgactttaaagtgacggcgggtccttcc
acgtccgacgacaaaggctcatcgggaggagacagcgggggaaactcgccgtcgtcctca
tccagcaggagcgctccggccaaaaagacgagtagcagcacccctaccaaaccaaaggct
gtaaaatcaaaaccccgcactcccacctctgaggcctccagcgccaagaaggtgaaggag
agcgttcagagcaacggacaaaacaaagcgtcttcccagctgctgcagccgaggaacgac
aagtcgctgctggacatcttcagcggggtcaagctcttcctccccgtctccgttcaggac
ttcgacagactgcggcggtactttgtggcgtacgacggggacctggtgccggattacgac
tccgcctcggctacacacacgctgggcgacccggaggggggcagccgggcccagagggtc
tctcccagctggatctgggaatgcatccgaaagcggcgcgtcgttcctccctgctga
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