Xiphophorus maculatus (southern platyfish): 102216830
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Entry
102216830 CDS
T02923
Symbol
scaf8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102216830 (scaf8)
03041 Spliceosome [BR:
xma03041
]
102216830 (scaf8)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102216830 (scaf8)
Spliceosome [BR:
xma03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102216830 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
102216830
NCBI-ProteinID:
XP_023208254
LinkDB
All DBs
Position
19:complement(11868124..11897306)
Genome browser
AA seq
1380 aa
AA seq
DB search
MEAVKAFNNELYTLTEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKAEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIITTFQHLYRCPPDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSTTPVLPSSTVPINNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERSEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMNIEGQDSIFGQENSVATAQSSAQPQLPEPENKM
DDSIDNQQQDMDLDEGPEGMEEEIFEAEEKKTLSTRSRTRSRSRSRSPKRRRSRSRSGSR
KRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSFKIGSKI
IKIAWALNKGVKQEYKQFWDADLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWETTK
TSEPAKEIASQAVSTEATVVSNTQSETYNQQVTMMPVQLPVAQAVPGAMGLVPPTFPVTM
GIPPPGYGPPPPFLRPGFNASQPPPGFMQAPHTAGIASVTTSLVQPSVASNQDAVMPPTS
TIPGSFLPSAIPGAGVFNPVGVQTQQANNDKIPPSAEGMDAAAELTLQGMQNAVRSGMGL
LGMHPSASLPHPLHQTGLSAPRMPGLLPLDVRPNLLQPGAAARFPLIMQQGPPQQASGLL
DNSLHARPRAPFPQMDPFNRAPNLSNESVSKTEDESSGADEGKDQDYRFPPMEKPSTGLL
PTPPPEHREPLGGGGGVPGGGRPPLLQTPGTQPPRSSLVGRLQALAGFTPDSRWNQGKGD
FDERDSMRGGPQPPGGPKGFQDERPPPGPNFPNRFDNRPGVTGGPTGVNAGPVGGPQPWN
RGGGPTPPFNSEHHKDLDDRRRPWERQRDRDERDFDFRRDVNGNRHHRERERERERDRDR
DRDRGRDRPRESDRDRDHEKEKERGGWTPILPLPTPLLPTPPINPNMALNQGKLLAPLKL
NPQVASVFQSHGQAKPPLLSQPPFQLQIRSPPPSLNPPPVSETKEEAQVPAATPEAKSPP
SAGSPRRSSDGQTPSTSTEPPSQSEPSHPDTPPQMKSPPQPVAEATLETTAFPDGERSLH
DSPLGFSHANHTQQDGRHTAEKQEEPQEDEKGALERAPIPEPLWLNGPGQHSVSMAELTP
ESSPESTSSPACHSLQLQSEPELRQEKMSSPKDLNNEQSEPQEDAPSQPVVDTVTDTEGT
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacaacgagctgtacacattgactgagtacaagccaccc
atctctaaggccaagatgactcagatcaccaagtcaggaatcaaggccataaaattctac
aagcatgttgtccagagtgtagagaagttcattcagaagtgcaaggcagaatacaaagtc
cctgggctgtatgtcatcgactccatagtcagacaatcccgccaccagtttgggacagag
aaggatgtttttgctccacggttcagcaagaacattatcacaacgttccaacacctttat
cgctgccctccagatgacaagagtaagatagtgcgagtcctgaatctgtggcagaagaat
gctgtcttcaagagtgacatcatacagcctttgttggacatggctgcaggaattccccct
cccagtacgacgcctgtcctgcccagcagcactgtgccgatcaataacactacacctggc
accccagctacgcccgccactccagcaaatatagtccaaggtctgccagactgggcctcc
cagatcacaaacacagatactgttgctgccgttgctcaaatcctgcagagtccccaggga
caacagcttcagcaactggtccagagtctgcagatgcagcagcagaagccccagccttcc
ctgctgcaggccttggatgctggcctggtggtccaattacaagctttgacagctcagctc
actgctgccgctacagccaacagcctcaaccccctggagcaaagggtctcctcttttaat
aaaaaactgttgggtccttttgactttggaaacgattcagaacgcagtgaggaatctaaa
aaggattcctcatcttctcagctgcccatggtgtctgagcctattaacagctcactcttt
catcaactggctgagcaactccaacaacaaaacctggagcagtttcagaagcagctgcta
gagcaccagcaaaaggcaatgaacatagaagggcaggattccatctttgggcaggaaaac
tcggtggcaactgctcagagcagcgctcagccacagcttcctgagccagagaataaaatg
gacgactccatagacaaccaacagcaggacatggatctagatgagggccccgagggaatg
gaggaggagatctttgaagcagaggagaagaagaccttaagcacacgttctcggacacgc
tcaaggtcacgctctagatctcccaaacgtagaagatccaggtcccgctctggttcacgg
aaacggaaacatcgcaagcgatcgcgctcccgctccagagatcgcaagaggaagtcgtca
cgttcttactccagtgaaagacgagcacgggaacgagagaaggaacggcagaagaaagga
ttaccccccatacgatccaagactcttagtgtgtgcagcactacactgtgggtgggccag
gtggataaaaaggccactcagcaagacctcaccaatctgttcgaagagtttggccagatt
gagtccatcaacatgatcccacccagaggctgcgcctacatatgtatggttcatagacag
gatgcataccgcgcccttcagaagctcagcactggctcctttaaaatcggctccaagatc
atcaagattgcttgggctctgaacaaaggtgtaaaacaagagtacaagcagttttgggat
gcagacctgggtgtcacctacataccatgggagaaggtcaaattggatgacctggacgac
tttgctgaaggggggattattgatcaagaaactgtcaatgatgagtgggaaacaaccaag
acttctgaaccagccaaggaaattgcaagccaggcggttagcactgaggccacagtggta
tctaatacccaatccgagacctacaaccagcaggtcactatgatgcctgtacagctgcca
gtggcccaagcagttcctggtgccatgggtttggtgcctcctacgtttcctgtcacaatg
ggcatacctccaccaggctacggaccgccaccaccatttttaagaccaggcttcaatgcc
tctcagcctccaccagggtttatgcaggcaccacatacagcaggaatagcctctgttacc
acatctctagtgcagccgtcagtggcctccaaccaagatgctgtgatgcctccaactagc
accattcctgggagcttcttgccatcggccatcccaggagccggtgtttttaaccctgtg
ggagtccaaactcagcaggccaacaacgataaaattccaccatctgcagaaggcatggat
gctgctgcagagctcacactacaaggcatgcagaatgcagtccgcagtggaatgggtctc
cttggaatgcacccctcggcttcactaccccatccactacatcagacgggtctgagtgct
ccacgaatgcccggcttgttgccgctagacgtacgacccaacctccttcaacctggagca
gctgcccgtttccccctgatcatgcagcagggaccccctcaacaagcatccggcctcctt
gacaattcccttcatgctcgtcccagggcgcctttccctcagatggacccattcaacaga
gctcccaacctctccaatgaaagtgtctctaaaacagaagatgagtcctctggagcggat
gagggcaaagatcaagactaccgcttccctccgatggaaaagcccagcacaggccttctg
ccgacccctccgccagagcatagggagccacttggaggtggcgggggagttccaggagga
gggagacctccgttgcttcagacccctggaactcagccaccaaggtccagcttagtgggg
cgtctgcaggctctggcaggattcactcctgatagccgctggaaccaaggcaaaggggac
tttgatgagcgagacagcatgcgaggaggaccgcagcccccaggtggtccaaaaggtttt
caggatgagcggcctccacccggtccaaacttccccaaccgctttgataaccgacctggc
gttacagggggaccaacaggtgtaaatgctgggcctgttggggggccacagccctggaac
agaggaggtggacccacacctcctttcaacagtgaacatcataaagacctagatgatcga
agacgtccatgggagaggcaaagagaccgagatgaacgagattttgacttcaggagagac
gtgaatggtaatcggcaccaccgcgagagagaacgggaaagggagcgtgacagagaccgg
gacagggaccgaggccgagaccgccccagggagtctgaccgcgacagagaccatgagaag
gagaaagagcgtggaggctggacgcctatcctcccactacctacgccgcttcttcccact
cctcccattaatcccaacatggcgcttaatcaagggaaacttcttgctcctcttaagtta
aacccccaggtagcatcagttttccagtctcatggtcaggccaaacctcctctcctgagt
cagccgccctttcagcttcagattaggtctccacccccatcactgaaccccccacctgtt
tctgaaacaaaggaggaagcccaagttcctgctgcaacgcctgaggcgaagtcccccccc
tctgctgggtcaccccgtcgctcttctgacggccagactccgagcacatcaaccgaaccc
ccctctcagtctgagccatcccacccagacacccctccacaaatgaaatcaccacctcag
cccgttgccgaagcaaccctagagaccactgccttcccagacggcgagaggtcactccat
gactcacctctaggcttctctcacgccaaccacacccaacaagatggccgtcacactgca
gagaagcaggaggagccacaggaggatgagaaaggggcactagagagagcccccattcct
gaacccctgtggcttaacggaccgggtcagcacagtgtcagtatggccgagctcacacca
gagtcctcccctgagtccacttcgagccccgcctgtcattctttgcagcttcaaagcgaa
ccggagctgcggcaggagaaaatgtcgtctcctaaggacctaaacaatgaacagagtgag
ccccaggaggacgctcccagtcagccagtggtagacactgtcacagacactgaggggaca
taa
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