Xiphophorus maculatus (southern platyfish): 102217400
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Entry
102217400 CDS
T02923
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102217400 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102217400 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102217400 (tnr)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102217400 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
EGF_Tenascin
FN3_Tor_3rd
EGF_2
Fn3_Dep-1_2nd
Interfer-bind
DUF4998
EGF_integrin
Motif
Other DBs
NCBI-GeneID:
102217400
NCBI-ProteinID:
XP_023191399
UniProt:
A0A3B5QHR6
LinkDB
All DBs
Position
6:complement(14287991..14465450)
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AA seq
1380 aa
AA seq
DB search
MPESKQLHWTTELTTMLALALLFALQGAAHAAPSGDNKLVRTTRVRRQIPEGDQFPSASS
VNQTLREQPLVFNHVYNINVPMESLCSVDLDASVAPDSHAELGSRPPVEGPGEPSGPTEY
TEQTLDAESQVTFTHRINIPKAACSCPAITTIQQLATRVEMLEREVSMLRAQCGSGCCGE
GSAIGRVDFVPGCSSHGSFSFDLCGCICEEGWGGKNCSEPRCPNDCSGQGVCIEGECVCD
RDFGGDNCSEPRCPSDCSGRGLCIDGECMCEESFTGEDCMVGRCLNDCSDQGMCVNGTCQ
CRPGYVGEDCSLVYCANNCSKKGVCKEGFCVCQDGFAGDDCNSVAPAMNLNARGVTDRTI
ELEWEGSIMVTDFLVTYTPSSPGGVQLEMRLPGNTTSWIITGLEAGIEYNINVFAVINNS
ISVPSSLTVWTYLSNPDGLVFKFITETSVEVQWQPFYYSFDGWEISFIPKDNDGGMTAQL
PSTITSFIQSGLRPGEEYTVNLVALREQGRSQPVTATFTTLIDGPTQLIVRDVSDTVAFV
EWTPPKAKIDQIVLRYGLVRGEGPRTTFRLQPTLTQYSLQVLRPGSRYEVSVSGVRKGNE
SGSISTEFTTALSFFSEIDAPKNLRLVSKTSTTLELEWDNSEAEVEGYQVVYSTLAGDQY
DKVIVPRNEGATTKTNLTDLLPGTEYGIGISAMKGINQSTPATMNARTGLDVPMDLTVTA
STDNSITLVWGVVQGPIDHYRVTYTSSSGITTELTVPKDITTTTLTDLDPGTEYTITVAA
RRGRQQSTAATIDAFTGIRPVTHLYLSEGTSDSVLVAWSAPAPPADLFILSYSSADGTDT
SKVTLDGSKTRSLVQGLLPSTHYTFSLITIQGDVTSEPLTASLRTEMDPPKELAVSDVTE
DSVTISWIKPLAPFEYYKLSYQSARGRVDSEMIDSDVTNYTLSSLFPATEYEISLNAVRG
SQESRPVTTSVFTAMDMPAELTALNITPQGALLRWTPPLSNVDNYVLTITHNQLTADTFL
VEGNKHEHQLSNLKPSTTYSVALYATKGPLTSGTVITNLQTPMDAPVNLTASEVNHRSGL
ISWQPPIAEIDNYMLTYKTPDGSRKELILDAEDTWIRLEGLAESAEYTVKLQAARGLDTS
AVVSTTFTTGSRLFSTPQNCAQHLLNGETVSGVYTIYINRDPSQGVQVYCDMTTDEGGWI
VFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQKIASQGRYELRIDMRDGQESVY
ANYDKFSIGDARNLYKLRIGEYNGTAGDSFSYHQGRPFSTKDRDNDIAVTNCALSYKGAW
WYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKRRRSTTV
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgccagaatcaaagcaacttcattggaccacagagctcacaacaatgttggctcttgct
ctcctttttgcactacagggtgctgcacatgctgctccatcaggagacaacaagctggtt
cgaaccaccagagtgagaaggcagatcccagagggggatcagtttccctctgcttcttca
gtcaaccagacgctacgagagcagcctcttgtctttaaccatgtgtacaacattaacgtg
ccaatggagtctctgtgctccgttgacctggatgcatctgtggccccagattctcacgct
gagttgggatccagacctccagttgagggtccaggggagccatccgggccaacagaatac
acagagcagacacttgatgcagagagtcaggtgacgttcacgcaccgcatcaacatacca
aaagcagcatgcagttgtccagcaataaccacaatccagcaacttgccaccagagtggag
atgctggagagagaggtgtccatgctcagagctcagtgtggatctggatgctgtggggaa
ggctctgccatcggtcgtgtggactttgtcccaggttgcagcagccatgggagcttcagc
tttgatctgtgtggctgcatctgcgaggaaggctggggcggcaaaaactgctcagagcct
cgttgcccaaatgactgctctggtcagggggtgtgcatcgaaggggagtgtgtgtgtgat
cgggactttggaggcgacaactgttcagagccacgatgcccctcagactgctcaggcaga
ggcctgtgtattgatggggaatgcatgtgcgaggagtccttcacaggagaagactgcatg
gttggacggtgtctcaacgactgctcagatcaggggatgtgtgtcaatgggacatgccag
tgccgccccggctatgtgggagaagactgttcattggtctactgcgctaacaactgtagc
aagaagggagtctgcaaggagggtttctgtgtctgccaggatggctttgctggagatgat
tgtaactcagtggcacctgccatgaatttaaatgcacgtggagttacagatcgtactatc
gagctggagtgggaagggtccattatggtgacagatttcttagtgacctacaccccaagc
agccctggaggtgtgcagctagaaatgaggctcccaggaaacacaacatcttggattatc
acaggtcttgaggcaggcatagagtacaacatcaacgtgtttgctgtaatcaacaactca
atcagcgttccctccagtctcactgtttggacgtacctctccaatccagatggattagtc
ttcaaatttatcacagagacatcagtggaagtccaatggcaaccattttactattccttt
gatggatgggagatcagcttcatccccaaggacaatgatggcggcatgacagcccagctg
cccagcaccatcacctcatttattcagagtggtctgaggcctggggaggaatatacagtc
aacctggtggcgctcagagagcagggtcgaagccagcccgtcactgctaccttcacaacc
ttgattgatggtccgactcagctgattgtgcgtgatgtgtcagacaccgtagcctttgtg
gagtggacaccaccaaaagcaaagatcgatcagattgtgttgcgttacggccttgtgaga
ggagagggcccgcggaccacctttagactccagcccacacttacccagtactcattacag
gttctgcgtcctggttcacggtacgaggtgtctgtaagtggagttaggaaaggaaatgaa
agcggctctatctctactgaatttacaaccgctttatcattcttctcagagatcgatgcc
cccaagaacttacggcttgtgtccaagacctccactaccctcgagcttgaatgggataac
agtgaggctgaggtggaggggtatcaggtggtgtacagcactttagcaggagatcagtat
gataaagtgattgtgccacgcaatgagggtgccaccactaagactaatctcacagacctt
ctgccgggtacggagtacgggattggtatctctgcaatgaagggtatcaaccagagtaca
ccagcaacaatgaatgccaggacaggcctggatgtacccatggatttaactgtgacagct
tcaactgacaactccatcactctggtgtggggtgtagtccagggtccaattgaccactac
agggtcacctacacatcttcctctggtatcacaactgagctgacagttcctaaagacata
accaccacgactctgacagaccttgaccctggaactgaatatacaatcacagtagcagca
agaagagggaggcagcagagcactgcagcaaccatagatgcctttacagggatcaggcct
gtaacccacctttacctgtcagaagggacatcagattcagtgttggtggcatggagtgcc
ccagcaccacccgctgacctcttcattctgagctacagctctgctgatgggacagacact
tctaaggtgacactagatggctccaagacgaggtcactggtccagggcctgctgccgtcc
actcactacacgttcagtttaatcacaatacaaggggatgttacctctgagccccttacg
gcatccctcaggacagaaatggacccgccaaaggaactggcagtctcagatgtgacagaa
gattcagtgaccatctcttggatcaaaccactggctccctttgaatattataagctctcc
taccagtcagccagaggtcgagtggacagcgagatgatagacagcgatgtgacaaactac
accttgtctagtctgtttcctgccacagagtacgagatcagcctcaatgctgtcagaggg
agtcaagagagcagacctgtcaccacgtctgtcttcacagccatggacatgcctgcagaa
ctgacagccctcaacatcactccacaaggagccctgctaaggtggacccctcccctgtcc
aatgtggacaactacgtgctgaccatcacacataaccagctgacagcagacactttcctg
gttgaaggaaacaagcatgagcaccagctgtccaacctcaagccaagcaccacctactct
gtggccctgtatgccaccaaagggcccctgacaagtggcactgtgatcaccaaccttcag
acacccatggatgcacctgtgaacctgacagccagtgaagtgaaccaccgcagcggtctc
atttcctggcagcctccaatcgcagaaatagacaactacatgctcacttacaaaactcct
gatggcagccggaaagagctgattcttgatgcagaggacacatggattcgactggaggga
ttggcggagagcgcagagtacacggttaagctccaggctgctagagggcttgataccagt
gctgtggtttccaccacctttactacagggagccgtctgttttcaacacctcagaactgt
gcccaacacctgctgaacggggagactgtgagtggcgtctacaccatttacatcaacaga
gatccgagccaaggggtgcaggtgtactgtgacatgaccacggatgaaggaggctggatt
gtgtttcagcgtcgtcaaaatggtctgactgacttttccaggaagtggagtgactatcga
gttggatttggaaaccttgaggatgagttttggcttggtctcgataacatccagaagatt
gcttctcagggacgctatgagctgagaattgacatgagggacggacaggaatcagtttat
gccaattatgacaaattttccattggagacgcaagaaacctctacaagctcaggatagga
gaatataatggcactgctggtgactctttcagctaccaccagggccgtccattctcaact
aaagacagagacaatgacatcgctgtcactaactgtgccttgtcctacaaaggagcctgg
tggtacaagaactgccaccgggccaacctcaacggaaaatatggcgaatccagacacagt
cagggtatcaactggtaccactggaaaggccacgagttttccattccctttgtggagatg
aagatgaggcccttcaactttcgcagtatcagcagtaagaggagacgatccaccactgta
taa
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