Xiphophorus maculatus (southern platyfish): 102217454
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Entry
102217454 CDS
T02923
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102217454 (casc3)
03015 mRNA surveillance pathway
102217454 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102217454 (casc3)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102217454 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
102217454
NCBI-ProteinID:
XP_005810367
Ensembl:
ENSXMAG00000013937
UniProt:
M4AHN3
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All DBs
Position
16:complement(3186258..3196013)
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AA seq
767 aa
AA seq
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MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPATKARGREPVPVEAPVSRSEAKSEVES
ECESEDGAGEAVLSDYDSADPEENASHSEGGEEEEEGFSEEEAPAAASEPKPAAPDGPTQ
DDGEEKDKEEEEEQEEEEEEEAGGSSKEESKAEEKGNLAGERQSGDGQESTDDPETKPGQ
QLDDDEDRKNPAYIPRKGLFFEHDVRGQTQEEERPKGRNRKLWKDEGRWEHDKFREEEQA
PKSREELIAIYGYDIRNGGGSGPGDRAYRQRRPRQSSPPGRDKRWRDGQRPARTWQNRGG
VPPPPSSVPPPSSSSAFPPLSAAQRNNNSSRPPPSRSRPPHYSQVHPLSQSEYRNNESNA
PQVHPRERHAPKTQLDPSGDRGGAGRGGRGHGGRGGSSVVIEEVSDGQSGAAEEDPRSES
AATAAARQPGGYQSPRRQHQEQRGSGDRAASGLAASTSDPALQSSAANREASPPAERPVE
RKSYSLARRTRSRPSDLGSKQASVEESAAGGNSSSPSSGGGKGWTGGSDGGSQTAAGGGG
VAELDQEVARLNLVRQTWSQSPTSYVRSEMRGLPNPIHMASGPPQYSNIEEMGVGSNRAK
RYSSQRQRAVPEPAPPMHLGVMETGHYYEPMSYQGPIYTHGEGPAPIPPQGMLVQPEMHI
PHPGLHPHQSGGPIANPALYGGPPVSLSPGQPQQLLPPPFYPPPGVMTFPYPAMYPSPQG
QTQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTVKPPPPEVPYASE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggagaaggaggcgcgcgtctcaggacagcgaggacgacgacgag
tccggctcgggttcggacagtgggaggtccggttctccagcgacaaaggcccgaggccga
gaacccgttccggttgaggcgccagtgagccggtccgaggcgaaaagcgaagttgagtcc
gagtgtgagagtgaagacggagcaggagaagccgtcctctcggattacgacagcgccgat
ccagaggagaacgcatcccactcagagggaggagaggaggaagaggaaggtttcagcgag
gaagaggctccagcagcagccagcgaacccaaacccgctgctcctgatggacccacacag
gatgatggagaggagaaggataaggaggaagaagaggaacaggaggaggaggaggaggaa
gaggcaggagggtccagtaaggaggagagcaaagcggaggagaagggaaacctggcagga
gagaggcagagcggagatggacaggagtccaccgacgacccggagacgaagcctggtcag
cagctggacgacgacgaagaccggaagaacccggcttacattcccaggaagggtttgttc
ttcgagcacgacgtccgtggacagactcaggaagaggagaggcctaaaggtcggaacagg
aagttgtggaaggacgagggccgctgggagcacgacaagttcagggaggaagagcaggcg
cccaagagccgcgaggagctcatcgccatctacggctacgacatccggaacggcggcggc
agcggccctggagaccgggcgtacaggcagcgcagacccaggcagagttctcctccaggc
agagacaagcggtggagagacgggcaaagaccggcccggacctggcagaaccgaggagga
gtaccacctccaccttcatctgtccctccaccctcctcttcctcagcgtttcctcccctc
tctgctgctcagcggaacaacaactcctccaggccgccgccctcccgcagcagaccccct
cactacagccaagtgcacccgttgtctcagtcagagtacaggaacaatgaatccaacgca
cctcaggttcatcccagagagcggcacgccccaaaaactcaactggacccatcgggagac
agaggcggggccggtagaggtggacggggccacggaggaagaggaggctcctctgtggtc
attgaggaggtttcagatggccaatcaggtgcagcggaggaggatccaaggtcagagtct
gcagcgacggctgcagcaaggcagccgggcgggtatcagtcaccgagacgacagcatcag
gaacaaagaggcagtggggacagagctgcctccggattggctgcctccacctctgacccc
gccctccagtcttcagcagccaatcgggaagcctctccaccggctgagcgccccgttgaa
cgtaaatcgtactctctggcccgcaggactcgctcgcggccgtcagacctcggcagtaag
caggcctcagtggaggagtcagcagcggggggaaacagctcctcacccagcagcggaggg
ggcaagggctggacggggggcagtgatgggggaagtcagacagcagcgggcgggggaggg
gtcgccgagctggaccaggaagtggcccggctcaatctggtccgacagacctggagtcag
agtccaacgtcgtacgtacgctccgagatgagaggtcttcctaaccccatccacatggcc
agtgggccgcctcagtactccaacatagaggagatgggcgtgggctctaaccgggccaag
cgttactcctcccagcgtcagagagccgttccagaaccggccccgcccatgcacctggga
gtgatggagactggacactactacgagcccatgtcgtaccagggaccaatctacacccac
ggagaaggccccgcccccatcccgccccagggcatgctggtccagccagagatgcacatc
cctcatcctggtctccatccccaccaatcaggaggccccatcgctaaccccgccctctac
ggaggcccacctgtctccctgtcaccggggcaaccacagcagctgctgcctcctccgttc
taccctcctcctggggtcatgaccttcccctaccctgccatgtatccaagcccacagggt
cagacccaggtgacgtacggcggcgtcacgtactacgacaccatgcagcagcaggctcag
cccaaaccgtcgccgccccgccgcacctctcagcccgtcaccgtcaaacccccccctcca
gaggttccctacgcctcagagtga
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