Xiphophorus maculatus (southern platyfish): 102217562
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Entry
102217562 CDS
T02923
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102217562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102217562
03036 Chromosome and associated proteins [BR:
xma03036
]
102217562
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102217562
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102217562
PBAF complex
102217562
GBAF(ncBAF) complex
102217562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_3
SpeFL
Motif
Other DBs
NCBI-GeneID:
102217562
NCBI-ProteinID:
XP_014330266
Ensembl:
ENSXMAG00000004690
LinkDB
All DBs
Position
13:22343157..22350907
Genome browser
AA seq
937 aa
AA seq
DB search
MSGGTNLGFPGINQALAHRKKDSSPSARFWESPDTLTQLEVVRQWIGKHYKKYVLVDAPS
CQVLAAVTLQLLQFQEDAFGRQAPNPALTKLPAHCFLDLQPGGGLCHILGTAYKFKVEQG
WRRFDLQNPSRTERNVEMFGVIEKALIQNNCVSIPVVFIDPTVDLELSSRLTGIIIKHKG
AITEDSIMATHHIYGSLASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSSSDVEGDV
EDVPHVERPWRVHAGWVLDTDVFNEWMNEEDYCVNERNLPFILRQRIHLQEDQDSKSTPF
KKRRRSPSPSTDGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEVVTLPKNVNLKK
DSENTPVKGGIMADLDDQEDDFPGREEDEGRSEIPRLSEGEDNITEQTHHIIIPSYTSWF
NYNSIHSIEKRALPEFFNGKNKSKTPEIFLAYRNFMIDTYRLNPQDYLSSTSCRRNLTGD
VCALIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPLQVSA
SQHMLNFPEKSREKPLDYQNFGLRTDIYARKHPKTKGANAGREWTEQETLLLLEALEVYR
DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENPVMSTV
AFLASVVDPRVASAAAKAALEEFSRAQEDSLYKTSDPSNHPEQTDAAEAESLDSSSHQVP
VRLDGVKMEPGVPKVDGDQVKREHSESILTEEGDVRGEDGENRGEGDDGTRGMELDLVEG
SVPMAAAAALSSAASKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDRE
KEALEQQRQQLLTERQTFHTEQLQQAEMKVRQQREQQGQPGYTMQHSGQPVANRMVPGGN
GQTMAPRLPGAPNGMYPSSQPDGIASAQPTPPSSSHS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggaacaaacctcggctttccggggataaaccaagcgttggcacatcgcaaa
aaagacagtagtccctctgctcggttctgggagagtccggacactttaacccagctggag
gtggtccgacagtggatcgggaagcactacaaaaagtatgtgctggtggatgctccatct
tgtcaggtcctggctgcagtcaccttgcagcttctccagttccaggaggatgcctttggc
agacaagctcccaaccctgcgcttacaaagcttccagcacattgcttcctggacttgcaa
ccaggcggtggactctgccacatcctcggcactgcttacaaattcaaggttgaacagggc
tggagaaggtttgacctgcagaatccatcaagaactgagagaaacgtcgagatgtttggt
gtgattgaaaaagctttaatccagaacaactgtgtctccatccctgtggtatttattgac
cctactgttgacctggagctgtccagcagactcactggcatcatcatcaaacacaagggt
gcaattactgaggacagtataatggccactcatcacatatacggctcacttgcttctaca
gaggaggatgagtggatgcgtcctgttatgcgaaaggataaacacgttttggtccactgg
ggcatgcaccctgacagttatgacagctggctgtcctcaagtgatgtggaaggagacgtc
gaagacgtgccgcacgtcgagaggccatggagggttcatgctggttgggttctggacaca
gacgtgtttaatgagtggatgaatgaggaggactattgtgtaaatgagaggaatctgccg
ttcatccttcgacagcgaatccacctacaagaagatcaggactccaagtccactccattc
aaaaagagaagacgctcaccctccccttccactgatggcagaaaaaaaggaaagaaaggg
agaaggcgtggccaacaggaagaggagccagaagaagacctgaccaaagacatggaggac
ccaacgcctgtgccaaatatggaagtagtcactctccccaagaatgtgaacctaaagaaa
gatagtgagaatacgccagtgaagggaggcatcatggctgaccttgatgatcaggaagat
gactttcccggaagggaagaagatgagggaagaagtgagatccctcgcttatcagaggga
gaggacaatatcactgaacaaactcatcatatcataatcccaagctacacatcatggttc
aattataacagcattcactcgatagagaaacgtgctcttcctgaattcttcaacggaaag
aacaaatcgaaaactcctgaaatcttcctggcgtatcgtaacttcatgatcgacacgtac
cgactcaatccccaggactacctcagctcaacgtcctgcaggcgcaacctcactggagac
gtctgtgcccttataagggttcatgcctttttagaacagtggggtttgatcaactaccaa
gtggatgcagagagccgacccctccctatgggacctcctccaacccctcatttcaacgtc
ctggccgacacgccatccggactggcacccctgcagcacaaaccccttcaggtgtccgcc
tcacagcacatgttgaatttcccagagaagagcagagagaaacctttggactaccagaac
tttggtctgcgcaccgacatctatgccaggaaacacccaaagactaaaggagcaaatgca
ggacgagaatggacagagcaggagacattgttactgttggaggccttagaagtgtacagg
gacgactggaacaaagtatcagagcacgtgggctccagaacgcaggatgaatgcatccta
cactttctacgtttgcccatcgaggacccttacctggaggactcgtcggcctctctgggg
ccgctggcgtatcagcctgtgccttttagccaatcggaaaaccccgtcatgagcaccgtg
gccttcctggcgtctgtggtagatccgcgtgtggcgtcagccgcagcgaaggcggcgctg
gaggagttctccagagcacaggaagactcgctgtataaaacctctgatccatccaaccat
ccagaacaaacagatgcagcggaagcggaaagtcttgactccagctcccatcaggttcct
gtgaggctagacggagtcaagatggagcctggtgtgccaaaagtggacggagatcaagtt
aaaagagaacatagtgaaagtattctgacggaggagggtgatgtcaggggggaggatggt
gagaacaggggagaaggggacgatgggacgagagggatggagctggacctggtggaggga
agcgttcccatggcagcagcagcagctctgtcatctgctgcctcaaaggccaagcactta
gcagcagtagaagagaggaagatcaagtctctggtggctctactggtggagacgcagatg
aagaagctggagatcaaactgagacattttgaagagctggaaaccatcatggacagagag
aaggaggctctggaacagcagcgccaacagctgctgacagagaggcagactttccatact
gagcagctgcaacaggcagagatgaaggttcgccagcagagggagcagcagggccagccg
ggttacacaatgcaacattcaggccagcctgtggccaacaggatggtacctggaggaaac
ggtcagacgatggcccctcgtctccccggagctccaaatgggatgtacccgtcgtcacag
cctgatgggatagcgtctgctcagcccactcctccgtcatccagtcacagctga
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