Xiphophorus maculatus (southern platyfish): 102217608
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Entry
102217608 CDS
T02923
Name
(RefSeq) protocadherin alpha-C2-like
KO
K16493
protocadherin alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
102217608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xma03036
]
102217608
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xma04515
]
102217608
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
102217608
Cell adhesion molecules [BR:
xma04515
]
Cadherins
Protocadherins
102217608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Motif
Other DBs
NCBI-GeneID:
102217608
NCBI-ProteinID:
XP_005803664
UniProt:
A0A3B5R2P5
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All DBs
Position
11:23393593..23419638
Genome browser
AA seq
1000 aa
AA seq
DB search
MAVTGTCNCTGRNVPFYYFVLFSLFCGLGFGQLRYSITEELENGALVGDLAHDLGLDIRR
LSTRKIKLTSNSGKRYVIVNPKNGKLLVNDRIDREALCDLSSTCLINLEVMVENPTEVHH
VEVEIVDANDNAPQFPRDEYQLEITESAMPGSRYPIENAQDPDIGSNSVRMYQLSTNENF
ALVSNKPSINTKHIELVLKKPIDREQTPYHQLILSAVDGGIPEKTGMAKINIRVLDSNDN
VPVFDNSVYKVKLLENSPKDTLVIKLNATDLDEGTNGEVYYSFSSYTPERVRQMFSMDTN
TGEIRVRSNVDYEETNSYEMYIQAMDKGPGAVAAHCKVVVEVVDVNDNVPQIVLSSLSSP
VREDARADTVVALISVTDRDSGTNKQVTLEIPAGLPFKIKSFRNYYTLVTSAFLDRETTD
AYNVTLSATDGGNPPLSSQKTIQVDVADVNDNPPRFEQTSYTVYVTENNAHGASLCTVKA
QDADIKENARITYTVLNDNNHGIPVTSYVSVKADTGEAYALRAFDYESLREFHFQVKAQD
GGIPPLSRVATVYIYIMDQNDHAPLIVSPAGNGTRSLETVQKNAEPGALVTKVVAYDADA
GPNAWLVYVLETATDLDLFKVHEHTGEIRTTRRILEDNSTSFALTVVVRDHGEPILSSTA
TINVAVMEVAPKVAPDTKKVMRPHTTWFFSNVTLYLIVALSATTFVFLVTVVVLAIVRCH
AYCSQPGSCSPCCGSQKPPPDGGSSSVNAGGGGGAGAPGQPNNNVVLRRDLKVEPHYIEV
RGNGSLTKTYCYKTCLTATSGSDTFMFYNTGRPISGTWGSGADRFFTSGSGFVRRLSMPD
ASLQICPEPKAPNADWRYSASLRAGVQSSVHMEESSVMQGAQGMLVQNWPTVSSAADGEG
GGELSPPVGAGVNSNSWHFRYGAGQGYMPPQPLKPGEIPPEAFIIPGSPAIISIRHDPGP
VDDKGDFISFGKKDEAKKKKKKKKDKKDKKDKGKDDSGDD
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgacggggacatgcaactgtacagggaggaatgtgcctttttattatttcgtg
ctgttttccttattttgtggccttgggtttggacagctgcggtattcgatcacagaagaa
ctggaaaacggagctctggtaggtgatctggcgcacgatttggggttggatattcgaagg
ctctccacccgaaaaatcaagttaacctccaacagcgggaagcgctacgtgattgtcaat
cccaaaaatgggaaactgctcgtcaatgacaggatcgacagagaggcgctgtgcgatttg
tctagcacctgcctcattaatctggaggtgatggtagaaaaccccacagaggtgcaccac
gtcgaggtggagattgtggatgcaaatgacaatgcgccgcagttccccagagacgagtat
caactggaaataacagaatctgctatgcctggttctcgttacccaattgaaaacgctcaa
gatccagatattgggtccaattctgtccgcatgtatcagctcagcacaaacgagaatttc
gcgctggtatcaaacaaaccttcaatcaacacaaagcacatagagcttgtgctcaaaaag
cccattgatcgtgagcagacgccttaccaccagttaattctaagtgctgtagatggtgga
atacctgaaaaaacaggcatggccaaaatcaacatccgggtcctggactcaaatgacaac
gttccggtgtttgacaactcggtatacaaggtgaaactgttagaaaactcccccaaagat
actcttgtgataaaactgaatgcgactgacttggacgaaggcacaaatggagaggtttat
tactctttcagcagctacactccagagagagtcagacagatgttcagcatggacaccaat
acaggtgaaataagagtgaggagcaatgttgactatgaggagaccaactcttatgagatg
tacattcaggcaatggataagggcccaggtgcagttgcagcccactgtaaggtggttgta
gaggttgtggatgtgaacgataatgtccctcagatagtgctgtcatctctctcgagccct
gtgagggaggacgcccgtgcagacacagtagtagccctcattagtgtcactgatcgagac
tccggcactaacaagcaggtgaccttagagatcccagcaggccttccattcaagatcaag
tcattcagaaactactacaccctggttacctcagccttcctggaccgcgagaccactgat
gcctacaatgtcactctgagtgccacggacggaggaaaccctcccttgtcttcccagaag
accatacaggtggatgtggcggacgtaaatgacaacccgccacgctttgagcagacttca
tacacggtatatgtgactgagaacaatgcccatggggcctctttgtgtactgtgaaagct
caagatgcagacatcaaagagaacgcacgcatcacctacacagtgctcaatgacaacaac
cacggcattcctgtcacctcatatgtgtctgtgaaggccgatacaggggaggcttatgcc
ctgcgagccttcgactatgagtcactgagagagtttcatttccaggtcaaagcccaagat
gggggcattcctccactcagcagagttgctaccgtctacatctatataatggatcagaat
gaccatgctccactgatagtcagtcctgctggcaatgggacacgctccctagagacggta
cagaagaatgcagagcctggtgccttagtgacaaaagtggtggcatatgatgcagatgct
gggccgaacgcttggctggtctacgtgctggagactgctactgacctggaccttttcaaa
gtgcatgagcacaccggagagatccggaccactcgaaggatcctggaggacaactccact
tcttttgctctaacagttgtggtgagagaccatggtgagccaattctctcctctacggcc
accatcaatgtggcagtcatggaggtggcaccgaaagtggcacctgataccaagaaagtc
atgcgacctcataccacatggtttttttcaaatgtgactctttaccttattgtggctttg
agtgccacaacatttgtattcctggtcactgtggtggtgctcgccattgtccgctgccat
gcctactgctcacagccaggttcatgctccccttgctgtgggtcacagaagcctcctcca
gatggcgggagcagcagtgtcaatgcaggcgggggaggaggtgcaggggccccgggacag
cctaataacaacgttgtgcttcgaagagacctaaaagtggaacctcattacatagaggtg
cgtgggaatggttccctgacaaaaacgtactgctacaagacctgcttgaccgccacctct
ggcagtgacaccttcatgttctacaacacgggtcggcctatcagcggcacctggggtagt
ggcgctgaccgtttcttcactagtggaagtggatttgtaaggagactgagtatgcctgat
gcctcacttcagatatgcccagagccaaaggccccgaatgctgactggcgatactctgcg
tctttgagagcaggtgtgcagagttctgtccacatggaggagtcttcggtgatgcagggt
gcccaagggatgctggtgcagaactggcctactgtatccagtgctgcagatggagagggc
ggtggggaactctctcccccggtgggtgctggagtcaacagcaatagctggcacttccga
tatggtgctggacaaggctatatgcctcctcagcctctgaaacctggagagattccaccc
gaggccttcatcatccccggatctccagccatcatctccatccgccatgacccgggccct
gtggatgacaagggtgacttcataagcttcggcaagaaggacgaggccaagaagaagaag
aagaagaagaaagacaagaaggacaaaaaggataagggaaaggatgacagcggggatgat
tag
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