Xiphophorus maculatus (southern platyfish): 102218085
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Entry
102218085 CDS
T02923
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102218085 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102218085 (smarca5)
03036 Chromosome and associated proteins [BR:
xma03036
]
102218085 (smarca5)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
102218085 (smarca5)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
102218085 (smarca5)
RSF complex
102218085 (smarca5)
WICH complex
102218085 (smarca5)
B-WICH complex
102218085 (smarca5)
NORC complex
102218085 (smarca5)
BRF complex
102218085 (smarca5)
NuRF complex (fruit fly)
102218085 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
102218085
NCBI-ProteinID:
XP_005797643
Ensembl:
ENSXMAG00000009678
UniProt:
M4A5J1
LinkDB
All DBs
Position
5:3863257..3874309
Genome browser
AA seq
1035 aa
AA seq
DB search
MSESENCVEQREEPTELEEAGGAEEKSDSSDAGKESSSEGGADAQDASSSSSSKTKESTP
GYEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSA
GDNRHRRTEQEEDEELLNESTKTTNVCTRFDESPSYVKTGKMRDYQVRGLNWLISLYENG
INGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAV
CLIGDRDQRTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKS
KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQ
KLVERLHTVLRPFLLRRIKADVEKTLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNSA
GKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNGGKMVVLDKLLPKMKEQ
GSRVLIFSQMTRMLDILEDYCMWKNYEYCRLDGQTPHEERQVSINAYNEPNSTKFIFMLS
TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVYRFITENTVEERIV
ERAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAIL
ERGERKTMEMKEKLSSLGESTLRNFTMDTENTSVYTFEGEDYREKKKVITNWIEPPKRER
KANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGY
KVPRNPDIPNSAQVQKEEQAKIDEAEALTEEELEEKENLLQQGFTIWSKRDFNQFIKANE
KWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIK
KALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIR
NSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKSSSAQKRKA
EGTPDGRGRRKKLKL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagcgaaaactgcgttgaacagcgggaagaaccaactgaacttgaagaagcc
ggaggagcggaggaaaaatcagactcttcagatgccggaaaagaatcctcatcagaaggt
ggtgctgatgcacaagatgcatcctcctcttcatcatctaagactaaagaatccactcca
ggttatgaggagaaagtgcaaactgaccgaaccaacagatttgaatatctgttaaagcaa
acggagctgtttgcacatttcatccaaccagctgcacagaagaccccaacttcccccctg
aagatgaagccgggccgtcctcggatcaaaaaagacgagaagcagaacctactctctgct
ggagacaaccggcaccgccgcaccgagcaagaggaggacgaagagcttctcaacgagagc
acaaagaccaccaatgtgtgcactcgctttgatgagtctccctcctatgtgaaaacagga
aaaatgagggactaccaggtccgtggtctgaactggcttatttctctgtatgaaaatgga
atcaacggcatcctggcagatgagatgggactggggaagaccctccagaccatcgccctg
ctgggttacatgaagcactacagaaacattccaggtcctcacatggtgctggtccccaag
tccactctgtacaactggatgaacgagttcaagcgatgggtgccctctctgcgtgccgtc
tgtctgatcggagaccgggatcagcgtaccgccctgatcagagacgttctgctgccagga
gagtgggacgtctgcgtcacgtcttacgaaatgctcatcattgaaaaggccgtgtttaag
aagttcaactggaggtacctggtcatcgacgaagctcacaggatcaagaacgagaagtca
aagctgtcagaaattgtgcgtgaatttaaaaccaccaaccggctcctcctgactggaacg
ccgcttcagaacaacctgcatgagctctgggctctgctcaacttcctgttgcctgatgtc
ttcaactcatcagaggattttgactcatggtttgacacaaacaactgcttgggcgaccag
aagctggttgaacgtcttcacaccgtgctgcgtcctttcttgcttcgtcgtatcaaagca
gacgtcgagaaaactttgcttcccaaaaaagagatcaagatttacgtgggtctgagtaaa
atgcagcgagagtggtacacaaagattctcatgaaggacatcgacatcctgaactctgca
ggcaaaatggacaaaatgcgtctgctgaacgtcctcatgcagctcaggaaatgctgcaac
catccgtacctgtttgatggggcggagcctggcccgccctacaccaccgacctccacctg
gtggtgaacggcggcaaaatggtggtgctggacaagctgttgcccaaaatgaaggagcag
ggctctcgtgtgctcatcttcagtcagatgaccaggatgctggacatcttggaggactac
tgcatgtggaagaactatgagtattgccgtctggacggacaaactccacacgaagaaaga
caggtctccatcaacgcgtacaacgagccaaacagcacaaagttcatcttcatgttgagc
accagggccggcggtctgggcatcaacctggctacagccgacgtagtcattctctacgac
tcggactggaacccccaagtcgacctgcaggcgatggatcgagctcacagaatcggtcag
cagaagcaggtgcgtgtttaccgtttcatcacagaaaacactgtggaggagagaatcgtg
gagagggctgagatgaagctgcgcctggactctatcgtcatccagcagggaagacttgtg
gatccgagtgcgaacaagctgggtaaagacgagatgttgtccatcatccggcacggtgcc
acacacgtgtttgcttccaaagagagcgagatcacagacgatgacattgatgcgatcctg
gagcgcggagaaagaaagaccatggagatgaaagagaagctgtcatctctgggtgaaagc
acactgaggaacttcaccatggacaccgagaacaccagcgtgtacacgtttgaaggagag
gactacagagagaagaaaaaggttatcaccaactggattgagcctcccaaaagagaacgg
aaagccaattacgctgtagatgcgtacttcagggaagctctgcgagtcagtgagcccaaa
gcacccaaggctccacgtccgccgaagcagccaaacgttcaggacttccagttcttccct
ccacgtctgtttgagcttctggagaaggagatcctgttctacagaaagaccatcggatac
aaggttccacgtaatcccgacatccccaactcagcccaggtccaaaaagaagagcaggcc
aagatcgacgaggccgaagctctgactgaggaggagctggaggagaaagagaatctactg
cagcagggattcacaatttggagtaaacgtgacttcaaccagttcattaaagccaacgag
aaatggggaagagacgatatcgagaacattgccagagaagtcgaggggaaaacacctgaa
gaagttatggaatattctgccgttttctgggagcgctgcaacgagttgcaggatatcgaa
aagatcatggcccagatcgagagaggagaagccagaattcagagaagaatcagcattaaa
aaagctctggactcgaagattggacgctacaaggctcccttccatcagctccgcatctcc
tacggcaccaacaagggcaagaactacacggaggaggaagaccgcttcctcatctgcatg
ctgcacaagctgggcttcgacaaggagagcgtctacgacgagctccgccagtgcatccgc
aactcgccccagttccgcttcgattggttcctcaagtccaggacagccatggagctgcag
aggcgatgcaacactctgatcacactgatagagagagagaacatggagctggaggagaga
gagaaggctgagaaaaagaagaggggaccaaagagcagctcagcgcagaaacgtaaagca
gagggaacccccgatggccgaggacgcaggaagaagctcaagttgtga
DBGET
integrated database retrieval system
