Xiphophorus maculatus (southern platyfish): 102218128
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Entry
102218128 CDS
T02923
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102218128
03015 mRNA surveillance pathway
102218128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102218128
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102218128
mRNA cycle factors
P-body specific factors
102218128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
102218128
NCBI-ProteinID:
XP_005810869
Ensembl:
ENSXMAG00000013452
LinkDB
All DBs
Position
7:complement(9552529..9557714)
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AA seq
468 aa
AA seq
DB search
MRSDKDQMTAGKEKSIFEIQLKDVPREQENIPANAKPKEEKKEVFTKVVIRRLPPNLSKE
QLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKSTEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPEILLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKEKSEPCDAGVGKWEKTGGQMKSK
EPKENRGQAESDKEQRDQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGY
CQDRAKKEGHHHGYSYCPDGADKMGKEDREDLSNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSANKGYDCLPIGHSPECRTEHCYEVVAMTAGIERGFEKSKDEQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgataaggaccaaatgaccgcgggtaaggagaaaagcatcttcgagatacaa
ttaaaagacgtcccaagagagcaagaaaacattcccgccaacgctaagccgaaagaagag
aagaaggaggttttcaccaaggtggttattcgaagactccctcctaacctgtcaaaggaa
caactggaagagcatctcagtcctcttccgtcttatgactactttgagtttttcccagca
gatcaaagtctctatccccacctcttctcccgagcttatatcaactttaaaagcacagaa
gacatcctgctgttcagggatcgatttgatggctatgtctttattgacaacaagggtcag
gaatatcctgctgtggtagagtttgcgcctttccagaagatttccaaaaagaagctgaag
aagaaagatgccaaagccggaagcattgaagaagatccagaatacaagcgatttttggaa
aactactcctgtgatgaggagaagtccatggctaatcctgagatacttcttggggagata
gaagctaagaccagagagctcattgccaaacgaacaacacctctcctggagtacatcaaa
aataagaaaatcgaaaaacagaggataagagaggagaagagggaagagagaagaagaagg
gagcttgaaaagaaaaggcaacgggaggaggagaaacgaaagcggcgagaggaggagaga
cgcaagcgaaaagaggcagagaagcagaagaaactgtccgataaagacatcaaaattaag
ctcctaaagaagagcgacagagacgatgacgttgattcagaccgaatgaaggaaaaaagt
gagccttgtgatgcaggtgtgggcaagtgggagaaaacgggagggcaaatgaagtcaaaa
gaaccaaaagaaaacagaggtcaggctgagagcgacaaagagcagagagatcagcacggc
cgcaggcagagagataaggatcaccgcggtaaggacgaggagagaaaacggcaacgacac
cactacgagtttgataagttcatgcggcggaaagacgagaccaaatgggggaagggctac
tgccaggaccgagccaagaaagagggccatcatcatggctattcttactgtcctgacggg
gcagacaaaatgggaaaggaggacagggaggacctgagcaacagaaaggaacgcctccga
aacaaggtgagcgagaaggaccgtcctgccatgcagctttatcagcccggcgcgcgcaac
aggaagcgcatgagttcggctaataaaggctatgactgcctccctatcggccattccccc
gaatgcaggacggagcattgttatgaggttgttgccatgacagcggggatcgaaaggggg
tttgagaaaagcaaagacgagcagtga
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