Xiphophorus maculatus (southern platyfish): 102218233
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Entry
102218233 CDS
T02923
Symbol
nfkb1
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04010
MAPK signaling pathway
xma04210
Apoptosis
xma04218
Cellular senescence
xma04620
Toll-like receptor signaling pathway
xma04621
NOD-like receptor signaling pathway
xma04622
RIG-I-like receptor signaling pathway
xma04623
Cytosolic DNA-sensing pathway
xma04625
C-type lectin receptor signaling pathway
xma04920
Adipocytokine signaling pathway
xma05132
Salmonella infection
xma05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102218233 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
102218233 (nfkb1)
04218 Cellular senescence
102218233 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
102218233 (nfkb1)
04621 NOD-like receptor signaling pathway
102218233 (nfkb1)
04622 RIG-I-like receptor signaling pathway
102218233 (nfkb1)
04623 Cytosolic DNA-sensing pathway
102218233 (nfkb1)
04625 C-type lectin receptor signaling pathway
102218233 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
102218233 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102218233 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
102218233 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xma03000
]
102218233 (nfkb1)
Transcription factors [BR:
xma03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
102218233 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_5
Ank_3
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
102218233
NCBI-ProteinID:
XP_014329265
Ensembl:
ENSXMAG00000015369
LinkDB
All DBs
Position
23:complement(625489..649923)
Genome browser
AA seq
952 aa
AA seq
DB search
MAADENYLHTSSQMFDTMMDPSFLEYSPFVPMPQMTALQSVDGPFLQILEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKICNYQGQARVVVQLVTALTQLPQLHAHSLVGKQ
CDKGICIADLQSKDSTISFPNLGILHVTKKNVAKTLEERMVEAFRMGYNCGVAIHPEIDA
LQGEVRVPRELSDHQRSMIISAAAAQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGGGGLYRGGGGGGGPASGVGGPGSAGGGYYQGFSSYS
YGGAGGGFSSAYSAGLGGGGSTKHALQSEAADDSGDDSDPDNDPASGAVLRGSAQSDSSD
VDPDEALMEATCRQLDALFRYSVTGDSAYLLAPQRPLMAHRTTTETLGCIWRCCTASRRL
TSLTQVVSTLTGEELLNMRNHLYQTPLHLAVITQQKQAAEVLLLAGADPTLTDRHGNTVL
HLAAQQEGDGMVELLLRRREMRELLQFSNTAGLCAIHLAVLANRLAALRELLVGGADVEA
QERSGGRTALHLATETDNVSLAGCLLLEGNAKVDSCTFNGSTPLHVAAGRGSVKLTALLM
AAGADPHRENFEPIFIRDEEEEEEDEDDEGYISGTTPVNMAACPEVLDLLNGQEYEPRSQ
RAFVPPQGDLSVLDVQVKQAVCGALEAEGCWENLAHHLGLGILNTAFRLSPNPARTLLES
YEVSGGTVSDLLAALRSAGGCRALSILEGALRQNQDTVEEVQNPLVQNLKRTLGTTAASA
TAGWSSPRCSALIGQHPHPPLHHSKILFYFKETADTTGPGPGRVGPDRTAEL
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgacgagaactacctgcacacctctagccagatgttcgacaccatgatggac
ccgtccttcctggagtattcccccttcgtcccgatgcctcagatgacggctctgcagtca
gtggacggaccgttcctgcagatcctggagcagcccaaacagcgcggcttcaggttccgc
tacggctgtgaaggtccgtcgcacggcggcctacccggagcctccagcgagaagaacagg
aagacgtacccgacggtgaagatctgtaactaccagggtcaggcccgggtcgtggtccag
ctggtgacggcgctgacccagctgccgcagcttcacgctcacagcctggtggggaagcag
tgcgataaaggcatctgcatcgctgacctgcagtccaaagactccaccatcagttttccc
aacctggggatcctccatgtgaccaagaagaacgtggcgaagacgctggaggagcggatg
gtggaggccttcaggatgggctacaactgcggcgtcgccatccacccggagatcgacgcg
ctgcagggggaggtccgggtcccgcgggagctcagcgaccaccagcgcagcatgatcatc
agcgccgcagccgctcaggccaaagagatggacctgagcgtggtgcgcctcatgttcacc
gccttcctgcccgacagcgacggcggcttctccagacgcctggagcccgtggtgtccgag
cccatctacgacagcaaggctccaaacgcctcaaacctgaagatcgtcaggatggaccgg
accgccggctgcgtgacggggggagaggaggtctacctgctttgtgacaaggtccagaaa
gatgacatccaggtgcggttctacgaggaggacgactcgggcctgacctgggaggctctg
ggcgatttctcccccacagacgtccacagacagtttgccatcgtcttcaagaccccaaag
tatcgagaccaaaacctgcaaaagccgacgtctgtcttcgtccagctaaagaggaaatcc
gacaacgagaccagcgagcccaaaccattcacctaccatccacagatcatagataaagag
gaggttcagcggaagaggcagaagacattgccgaacttccaggacttcagcggacatgga
ggaggaggaggaggcggggggctgtaccgaggtggaggaggtggaggaggtccagcttca
ggagtaggaggtccaggctcagcaggaggaggatactaccagggtttctcctcctacagc
tacggaggagcaggaggaggattctcctcagcatattcagctggtcttggaggaggcggc
agcacaaagcatgctttgcagagtgaagctgcagacgacagcggcgatgacagcgaccca
gacaacgacccggcgtcgggcgctgtgctacgaggctccgcccagtccgacagctccgat
gtggatccagacgaggcgctgatggaggcgacctgcaggcagctcgacgctctcttccga
tactccgtcaccggagactcggcgtacctgctggctccacagcgccccctgatggcgcac
aggacgacgacggagacactgggctgcatctggcggtgctgcacagccagcaggaggctg
acgagtctgacccaggtggtgtcgactctgacgggagaggagctgctcaacatgaggaac
cacctgtaccagactcctctgcacctggcggtcatcactcagcagaagcaggcggccgaa
gtgctgctgctggctggcgctgacccgactctgacagatcgccatggcaacacggttctt
cacctggcagcgcagcaggaaggagacgggatggtggagcttttactgcgacgcagagag
atgagagagttgctgcagttcagcaacacagcaggtctgtgtgccatccacctggcggtt
ctggccaatcggctggcggcactcagggagctgctggtgggcggggccgacgtggaggct
caggagcgcagcggcggacgcaccgcgctgcacctcgccacggagaccgacaacgtgtcg
ctggccggctgcctgctgctggagggaaacgccaaggtggacagctgcaccttcaacggc
tctacccccctgcacgtggccgcgggacggggctccgtcaagctgacggctctgctgatg
gctgcaggtgccgacccgcacagggagaactttgagccgatcttcatcagggatgaggaa
gaggaggaggaggacgaggatgatgaaggctacatctcaggaaccactccagtcaacatg
gccgcctgccctgaggttctggatcttctaaacggtcaggagtacgagcccaggagccag
cgagccttcgtcccgccacagggcgacctctcagttctggacgtgcaggtgaagcaggcc
gtgtgtggcgcactggaggctgaaggatgctgggagaacctggctcaccatctgggcctc
ggcatcctgaacacggcgttccggctgagtccaaacccggccagaaccctgctggagagc
tacgaggtttctggtggaaccgtttcggacctgctggcagctctccggtctgcaggcggc
tgcagagcgctgagcatcctggagggggcgctgcgccagaaccaagacacggtagaggag
gtccagaaccctctggtccagaacctgaagcggaccttgggaacgacagcggcgtctgcg
acagcggggtggagctctccacggtgtagcgctctgattggccagcatcctcatcctcct
cttcatcactcaaagattctattctattttaaagaaactgctgacacaactggaccggga
ccgggccgggttggaccggaccggaccgctgaactctga
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