Xiphophorus maculatus (southern platyfish): 102218560
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Entry
102218560 CDS
T02923
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03030
DNA replication
xma03410
Base excision repair
xma03420
Nucleotide excision repair
xma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102218560 (rfc1)
03410 Base excision repair
102218560 (rfc1)
03420 Nucleotide excision repair
102218560 (rfc1)
03430 Mismatch repair
102218560 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xma03032
]
102218560 (rfc1)
03400 DNA repair and recombination proteins [BR:
xma03400
]
102218560 (rfc1)
DNA replication proteins [BR:
xma03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102218560 (rfc1)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102218560 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_17
AAA_5
RuvB_N
Rad17
AAA_33
AAA_14
AAA_16
AAA_7
NTPase_1
nSTAND3
BRCT_2
RNA_helicase
AAA_18
AAA_19
Motif
Other DBs
NCBI-GeneID:
102218560
NCBI-ProteinID:
XP_023189691
Ensembl:
ENSXMAG00000009566
LinkDB
All DBs
Position
5:complement(13109309..13121715)
Genome browser
AA seq
1174 aa
AA seq
DB search
MDIRRFFGPVSGKPAPNVDRKPDEKRKKKSSSEEDVKKKKKKKEEEEEGSKVKSSKNEEQ
HKSSEKKRKKRQVIESDSDEEEPVMKAKKSSKGKAATSKADPPPKKDPVQYVSETDSDSD
NFQSLKKASKSKQNGANKKSEGNNCSPKVKERLKSPAKPPLSRGKTEIKSPKVPTTPKLA
PPPPPKQTLTSVLDYFGSGEIHRSDKKLVASTKRKAPTQELDDLISDEELARQLQMEEDM
EVEKQVHEDEGFARTLAMLDSEPQPKKARKNSEEKPSPTTTPKKSSVSVPSKTSRTPPED
VISPSPQKSPAAVRASSKLAMMKKRDEAKDEGAKSKTPTSPRKNKISPKKEPRASSISDM
KFTPKAGTTPTALKTSPKKPESASTSPDDAEKKKMHTLAFRNYLNRDGPRALGSKEIPEG
AENCLEGCVFVLTGVLESMERDDTKALIERYGGKVTGNVSKKTNYLVQGRDSGASKLDKA
ESLGTIILDEDGLLELIRTKPGKKSKYEIAAEAECKASKTRTPSSETSKVTPKAQKISPS
KGNSRSPKTPSPSKTGQRQRASGSSSSTPTGWGSRQTARRELGLPNTPSSSSAPGPSPPS
PQGDAAGLLWVDKYRPRSLKGVIGQQGEQSCANKLLRWLQNWHRHHSGGPDKPAASRFGK
FGGGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAES
LNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCND
RNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAYKEGIKIPPPALNEIILASNQDVRQV
IHNLSMWSAKDKVMTYDRCKSDAARARKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLF
FHDYSLAPLFVQENYLHVRPAAARGDMKSHLVLLSKTADSIADGDLVDRRIRSSQNWSLL
PTQAIFASVLPGELMRGYMSQFPVFPSWLGKHSSTNKHSRIVQELTAHMSLKTLSSRQAV
NLDYMHYLRQALLHPLQRHGAEGAAQAVQLLDDYQLLKEDVDSIMEISVWGGQPDPYSKL
DSKVKAAFTRAYNKEVHLTPYSLQAVKKGRGGGGADLDGGDEGPDDQESGDEAEGLKADA
MIKQKKTKTTKESTKEKKQESGKGKGKGKGKAKK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttggaccggtatcaggcaagcctgccccaaacgtagaccga
aaaccagacgagaagaggaaaaagaagagttcctcagaagaagatgtgaaaaagaagaag
aagaagaaggaggaggaggaggagggctccaaggtcaaaagctccaaaaatgaagagcaa
cacaaaagcagcgagaagaaaagaaagaaacgccaagttatagaatcggattcagacgag
gaagagccggtgatgaaggctaagaaatcctccaaagggaaagctgcgaccagcaaagca
gatccgcctcctaagaaggatcctgtgcagtacgtctctgaaacagactcggacagtgac
aactttcagagtctgaagaaggcctccaagtccaaacagaacggcgctaataaaaagtca
gaaggcaacaattgcagtcctaaagtcaaagagcgactcaagtctcctgctaagcctcct
ttgagtcgggggaaaactgagataaagagtcccaaagttcctacaacccctaaactagcc
cctccccctccgcctaagcaaactctcacctctgtactcgactacttcggcagcggagag
attcaccgctctgacaagaagctggtagccagcaccaaacgaaaggctccgactcaagag
ttagacgacctgataagcgacgaggaattggcccggcagctgcagatggaggaggacatg
gaggtggagaaacaagtccatgaggacgaggggtttgccagaacgttggccatgctggac
tccgagccacagcccaaaaaagctcgcaaaaactctgaggaaaaaccaagtccaaccacg
acccccaagaagagcagcgtgagtgtcccgtcgaagaccagtcggactcctccggaggac
gttatcagtccgtcgccccagaagagccccgctgctgtcagagccagctccaagctggcc
atgatgaagaagcgggacgaggcgaaggacgaaggcgcaaaaagcaaaacacccacttca
ccgaggaaaaacaaaatctctccgaaaaaagagccgcgtgcttcatcgatttcggacatg
aaattcacacccaaagcaggaacgacaccaacggcgctgaaaacgtctcctaagaagccc
gagagcgcaagtacaagtcctgacgatgcggagaagaagaagatgcacactctagctttc
aggaattacctcaacagagacggaccacgagcgctgggatccaaggaaatcccagaggga
gcagaaaactgtttggaggggtgtgtgtttgtgctgactggagtcctggagtcgatggag
agagacgacaccaaagctctcattgagcgttacggaggcaaagtgacgggaaacgtcagc
aagaagaccaactacctggtgcagggcagagacagtggagcgtccaaactggacaaggct
gagagtttaggcaccatcatcctggatgaggacggcttgttggagttgatcagaaccaaa
ccagggaagaagtcaaagtatgagatcgctgcagaagctgagtgcaaagcctcaaaaacc
agaactccttcaagtgagacctcaaaggtcacccccaaggctcagaagatctccccctcc
aaggggaactccaggtcccccaagaccccgagcccctcaaagacgggccagagacaaaga
gccagcggcagcagcagcagcactccaactgggtggggctccagacagacagcccgaagg
gagctgggccttcccaacacaccctcctcttcctcagctcctggaccctcccccccttcc
ccgcagggggacgctgccggtctcctgtgggtggacaagtaccgtccacgttctctgaag
ggtgtgatcggccagcagggggagcagagctgcgccaacaagctgctccgctggctgcag
aactggcacagacaccacagcggaggaccggacaaacccgcagcatcgaggtttggtaaa
tttggaggagggaaggatgacggatcaggatacaaagctgctctgctctctgggcctcca
ggggtggggaagaccaccacagctgccctggtctgtgaggagctgggcttcagctacgtg
gagatgaacgccagctgcactcgcagcaaaaacagcctgaaggaagtcgtggcggagtcg
ctcaacaacaccagcatcgagaacttctacaaaggaacgtctcagacggtgagcagtaag
cacgtcctcatcatggacgaagtggacggcatggctggaaatgaagaccgaggaggaatc
caggaaatgatcggcctgatcaaaaactcaaagattcccatcatctgcatgtgcaacgac
cgcaaccaccagaagatcagatcgttggccaattactgcttcgacctgcgtttccagagg
ccgcgggtggagcagatcaagggagccatgatgtctcttgcttataaagagggtatcaag
atccctcctccggctctcaatgaaatcatcttggcctccaaccaggacgtgcgacaggtg
attcacaacctgagcatgtggtcggccaaagacaaggtgatgacgtacgaccggtgcaag
tccgacgcggccagggcccgcaaggacatgaagctggggccgttcgacgtctgcaggaag
gtgttcgcctcgggcgaagagacggcccacatgagcctcatcgacaagtccgacctcttc
ttccacgactactctctggcgccgctcttcgtccaggagaactacctgcacgtccgtccg
gctgcggctcgtggagacatgaagtcccacctggtgctgctcagtaagactgccgactcc
atcgccgacggcgacctggtggacagacggatccgatcgagtcaaaactggtccctgctt
cccactcaggccatctttgccagcgtgttgccgggggagctcatgagaggctacatgtct
cagttccccgtcttccccagctggctgggcaagcactcctctaccaacaaacattcccgg
atcgtgcaggagctgaccgcacacatgagcttaaagaccctgagcagcagacaggcggtg
aacctggactacatgcattacctgcgccaggcgctgctgcatccgctgcagaggcacgga
gcggagggagcggcgcaggccgtgcagctgctggacgactaccagctccttaaggaggac
gtagacagcatcatggagatcagtgtgtggggcgggcagcctgacccctactccaaactg
gactccaaggtgaaggcagctttcacgcgggcgtataacaaggaggtccacctgacgccg
tattccctccaagctgtgaagaagggccgaggaggaggaggagcggatctggacggagga
gacgaaggtccagatgaccaggagtctggggacgaagccgagggcctcaaagcagacgcc
atgatcaaacagaagaagaccaaaacaactaaagagtcgacgaaggagaagaagcaagag
tctgggaagggcaaaggcaaggggaaaggcaaagcaaagaaatga
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