Xiphophorus maculatus (southern platyfish): 102219846
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Entry
102219846 CDS
T02923
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
102219846 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102219846 (myo5c)
04131 Membrane trafficking [BR:
xma04131
]
102219846 (myo5c)
03029 Mitochondrial biogenesis [BR:
xma03029
]
102219846 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xma04812
]
102219846 (myo5c)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
102219846 (myo5c)
mRNA cycle factors
P-body specific factors
102219846 (myo5c)
Membrane trafficking [BR:
xma04131
]
Others
Actin-binding proteins
Myosins
102219846 (myo5c)
Mitochondrial biogenesis [BR:
xma03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
102219846 (myo5c)
Cytoskeleton proteins [BR:
xma04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
102219846 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
AAA_22
Myosin_N
Motif
Other DBs
NCBI-GeneID:
102219846
NCBI-ProteinID:
XP_023181951
Ensembl:
ENSXMAG00000006735
LinkDB
All DBs
Position
2:6939190..6966578
Genome browser
AA seq
1740 aa
AA seq
DB search
MALSELYTKYNRVWIPDEGQVWKSAEITKDFHSGDHVLELLLEDGTDLLHPVDPSKPKLP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESRIIYTYCGIILVAVNPYKQLPVYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSGSQTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDRRYRIIGANMR
TYLLEKSRVVFQAENERNYHIFYQMCSCADSAEFKHLRLLSADEFRYTGMGGDITIDGVY
DKKDFEETRQTFSLLGLKEDFQSDVFKVLAAILHLGNVEIRSSGDDKSSAALSDPHLAAF
CDLLCVSAAELVRWLCNRRIVLVAETVVKPVPKERAAAGRDALAKQIYAHLFDCIITRIN
TALQVPGKQHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDQSWLQKLFNYLEANPLFEKP
RLSNEAFVIQHFADKVEYQCRGFLEKNRDALYEELVDTMRASKFSFLAHFFQEEEQSRAA
SKGVKVKSARPSVKPANKQLRTSVGDKFRGSLSLLMGTLNATTPHYVRCIKPNDEKLPFE
YDSGRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMSHVEADFNDKKETCKNV
LQRLIQDPNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGACMTIQKHVRGWSRRRKYLRIR
EAAIILQQYIRGKRMIRKMVTAETLKQGWAAVVIQRHWRGYCMRQIYHVVQMASITIQAF
TRGWMARKRYKKMIEEHKALVLQKYAKAWLARRRFQTMRRLVLNVQLSYRVQQLRKKTEE
QNKENRGLMERLTSLASSHSQTMEKLHSQEAQLEKLTNLKASLEEREKKAREEASMTINQ
LQRQFEELNTEKQNLEKKLEVSIKETKESFDQVKRNLLEEKENEVRLRKIAENNTEIQRH
DHEKELEILKEEIKRLKEDRVSLQRKVEDGAQVNSDLQEQVIQLTKHVKVIPELRRDLNN
LQNQKNNLDRKMKEQSEQTRAKTKEIVRQLLGGFVEEEKLLGLVPEDSEKIYELDDLQEA
FESLQKATRLLENHQKEQRETYESQMEGLTLRVDHLQNENSKLQNLFQEKSNINEDIRQE
VSRLSSENSVIPELKLQVSELHRQKQELETVVKEQSSELAEKNMEISNILHKKITEESSQ
RRHFEEKARELEEIREELQVKIEELEEENEHLKRQQLMEGEVKRKLREETSQLTAENMDL
EEQLDQKERWIKKLHSQIKCLEMSQKAKQTPALPKEYLGMLEYKREDEARLIQNIITDLK
PKGVVVNVIPTLPAFILFMCVRHADYLNDDNKLKSLMNGIIQGVKKVVVAHHKDFESLSF
WLSNTYRLLNCLKQYSGEEQFLKQSTPRQKKNCLQNFDLSEHRQILSDLAIQIYHQLISI
MQKKLTPAIVPGMLEHESLQGISSMKPTGFRKRSSSLYNDSETYTISSILQELSVFYSAM
SHHGMEQSLTTQAVKQLFFLIGATTFNQIMLRKDMCSCRKGMQIRCNISYLEEWLKENEL
QSCGAIDTLRPLAQAAWLLQVNKSTDEDAKEIAEKCTELNPVQIVKILNSYTPIDDFEKR
VTSSFVRQVQSFLQEYEGATQLMLDTDYRFQVTFPFCPSSTALESLQVPSSLHLEFLTRI
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggctttatctgagctgtacacaaagtataacagagtgtggataccagatgaaggacaa
gtgtggaaatcggctgaaatcactaaagacttccactcaggcgatcatgttcttgaatta
ctcctggaagacggaactgatctcctccacccggttgacccctccaaacccaaactgccg
cctctcagaaacccagacatcttggtaggggagaacgacctcacggctctcagctacctg
cacgaacctgcggtcctgcacaacctcaaagtccgatttgtcgagtccagaatcatctac
acctactgtggtatcattctggtcgccgtaaatccatataaacagcttcctgtctatgga
gatgcaatcattcatgcttattcaggccagaacatgggagacatggatcctcatatattt
gctgtggcggaggaggcgtacaaacagatggccaggaatcataaaaaccagtccatcatt
gtgagcggggaatccggagctggaaaaaccgtatcggcgcgttacgctatgaggtacttt
gctgttgtgagcaaatctggaagtcagactcgggttgaagacaaagtgttggcttccaat
ccgatcacagaggcaattggaaatgcaaaaaccacccgaaacgacaacagcagcaggttt
ggaaaatacacagagatcagctttgacaggaggtatcgcatcatcggagcgaacatgagg
acttacctcttagagaagtccagggtggtttttcaggcagaaaatgagcgtaattaccac
atattctaccagatgtgttcgtgtgcagactctgcagagttcaagcacctgagactgttg
agtgcagatgagttcaggtacaccggcatgggtggcgacataactatagatggtgtgtat
gacaaaaaagactttgaagagactcgacagaccttctcccttctgggtttgaaagaggac
ttccagtcagatgtttttaaagttttagctgcaattttgcatttggggaatgtggagatc
agaagctctggggacgacaagtcatcagctgctctgagcgatccacacctggcggcgttc
tgcgacttgctgtgtgtgagcgcggctgagctggtgcgatggctgtgtaatcgccggatc
gttctggtggctgaaacggtcgtgaagccggttcctaaagagcgagcagcggccggcaga
gacgctctggctaagcagatctacgcacacctgtttgactgcatcatcaccaggatcaac
acggcgctgcaagttcctggaaaacaacacgctttcatcggcgttctggacatctacgga
tttgaaacatttgacatcaacagctttgagcagttttgtatcaactatgcgaatgaaaag
ctccagcagcagtttaacttgcatgtgttcaaactggagcaggaggagtacatgaaggag
gacatcccttggactctgatagacttttatgataatcagcctgttattgacctgatcgaa
gcaaagatggggatcctcgacttgctcgatgaagaatgcttatttccccaaggaacagac
cagagctggctgcagaagctgttcaactaccttgaagccaatcctttgtttgagaagccc
aggttatcaaatgaggcatttgtgattcaacactttgcagacaaggtggaatatcagtgc
cgaggttttcttgagaagaatcgagatgctctttatgaagagctggtggacacgatgaga
gccagtaagttttcctttctggcacatttcttccaagaggaggagcagagcagagcggcc
agtaaaggcgtcaaagttaaatcagccaggccttctgtgaaaccagccaataagcagctg
aggacttcagtgggagataagtttcgcggctccttgtctttactgatgggaacgctgaac
gccaccacccctcactatgtgcgctgcataaagccaaacgatgaaaaactcccatttgaa
tatgactcggggcgggtggtgcagcagctgcgggcctgcggagtgcttgaaactattcgg
atcagtgcacagagctacccgtccaggtggacgtacattgagttttacagccgatacagc
atcctgatgtcacacgtggaggcagatttcaacgacaagaaagaaacctgcaaaaatgtc
ctgcagagattgattcaggaccccaaccagtacaagtttggccgtacaaagatcttcttt
cgcgctggacaggtagcttatctggagaagctgcgtctggatcgactgagaggagcctgc
atgacgattcagaaacacgtccgtggatggagccgcaggaggaaatacctgaggatacga
gaggcggccatcatcctccagcagtacatccgagggaagaggatgatccgtaaaatggtg
accgctgaaacactgaagcagggctgggctgctgtggtgatccagagacactggagaggt
tactgcatgagacagatctaccatgtcgtccaaatggcctccatcaccatccaagccttc
accagaggatggatggccagaaaacgctacaagaagatgattgaggagcacaaagctctg
gttctgcagaaatatgccaaagcatggctggcccggcggcgttttcaaaccatgcgccgc
cttgtgcttaatgtgcagctctcctaccgggtgcagcagctcaggaagaagactgaagag
cagaacaaagagaatcgaggattaatggagagactgacgagtctggccagcagtcattcc
caaacgatggaaaaactccacagtcaggaggcgcaactggaaaaactaacaaacctgaag
gcatctctggaggaaagagaaaagaaagcaagagaagaggctagcatgacaattaatcag
cttcaaagacaatttgaagaactaaacactgaaaagcagaacttggagaaaaagcttgaa
gtttccatcaaagagacaaaagaaagttttgatcaagtaaaaagaaacctcctggaagag
aaagagaatgaagtccggcttagaaaaattgcagagaacaacactgagatccagagacat
gaccacgagaaagagctggaaatcctgaaggaggagataaagagactgaaagaggacaga
gtgagtctgcagaggaaggttgaggatggggcgcaggtgaactctgacctgcaggaacag
gtcattcagctcaccaagcatgtgaaggtcatcccggagctgcgcagagatctgaacaac
ctgcagaatcagaagaacaacctggaccgtaagatgaaggaacagtcggagcaaacaaga
gctaaaacaaaggaaattgtaagacagctgcttggcggttttgttgaagaggaaaagctt
ttggggcttgttccagaagactctgagaagatttatgaactggatgatttgcaggaagcc
tttgagagtctgcaaaaagccaccaggttactggaaaaccaccagaaggagcagagggag
acgtacgagtctcagatggagggcctgactctgagagtggaccaccttcagaacgagaac
agcaaactgcaaaatcttttccaggaaaaaagcaacatcaacgaggatatccgccaggaa
gtatcgaggctgagcagtgagaactcggtcataccggagctgaagctgcaggtttcagag
ctgcacagacaaaagcaggagcttgagacggttgttaaagagcagagcagcgagttggca
gaaaaaaatatggagatcagcaacattctccataagaagatcacagaagaaagctcccaa
cgcagacattttgaggagaaagccagggagctggaggagatcagagaggagctccaagta
aagatagaggagttggaggaggagaatgaacatttgaagagacagcagctgatggagggc
gaagtgaagagaaagctgagagaggagacgtcgcagttaacagctgagaacatggactta
gaggagcagcttgaccagaaagaacgctggattaagaaactccacagtcaaataaagtgc
cttgaaatgtcacagaaagcaaaacaaactcctgctcttcctaaagaatatcttggcatg
ttggagtataagagggaggatgaagcaagactcattcaaaacatcataactgacctgaag
cccaaaggtgtggtggtcaatgtgattcctactctcccagccttcatcctcttcatgtgc
gtccgccatgccgactacctgaacgacgacaacaaactgaagtctctgatgaacgggatc
atccaaggggttaaaaaggtcgtcgtggctcaccacaaagactttgagtcgttgtccttc
tggctctccaacacataccggctgctcaactgtctgaaacaatacagcggggaggaacag
ttcctgaagcagagtaccccgcgccagaagaagaactgcctgcagaacttcgatctgtcc
gaacacagacagatcctcagcgacctggccatacaaatctaccatcagctcatctccatc
atgcagaagaagctcacgcctgctattgttcctggtatgctggagcatgagagcttgcag
gggatttctagcatgaaaccgactggcttcaggaagcggtccagcagcttgtataatgac
tcggagacgtacaccatctcctccatcctgcaggaactctccgtgttttattctgccatg
agccaccacggcatggagcagagcctgaccacgcaggccgtcaaacagctcttctttctg
atcggagccaccaccttcaaccaaatcatgctccgcaaagacatgtgctcctgcaggaaa
ggaatgcagatcaggtgtaacatcagctacctggaggagtggctgaaggagaacgagctg
cagagctgcggcgccatcgatacgttgaggcctctggctcaggccgcctggctgctgcag
gtcaacaaatccaccgacgaagacgctaaagagatcgcagaaaagtgcaccgaactcaac
cctgtccagattgtcaagattttgaactcctacacacccatcgatgattttgagaaacga
gtgacgtcatcgtttgttcgccaagttcagtccttccttcaggaatacgaaggcgccacg
cagctgatgctggacacagattatcgcttccaggtgacgtttcctttctgtccgtcttcg
acagcgttagagtctctgcaggttcccagcagccttcatctggagttcctaaccaggatc
tga
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integrated database retrieval system
