Xiphophorus maculatus (southern platyfish): 102220034
Help
Entry
102220034 CDS
T02923
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xma03041
]
102220034 (ddx20)
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102220034 (ddx20)
Spliceosome [BR:
xma03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
102220034 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
102220034
NCBI-ProteinID:
XP_014328872
Ensembl:
ENSXMAG00000007573
UniProt:
M3ZZF4
LinkDB
All DBs
Position
1:complement(17703436..17709559)
Genome browser
AA seq
766 aa
AA seq
DB search
MAASMRRAAHDIETRKRTEDVLLAEGIDFGSLLLSQAVLDGLSSAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFVTIALESLILENPSTQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKAHLKKCHVAVGSPGRIKQLIELGMLSTGSVRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMNEPTFVRLNPSDMGLKG
LKQYYKLLQSHPLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLSQEQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGMAVTYCCHGEEENKMMAIAQKCGLSLSALPSVLEPGLMDEPCDWDVCA
DAAAPDTILPLISRTVKKKRTKVGVPASDVTKNKAVESSNQRPDKAQTATLMPQHEEESE
RQVTSTGVKSLQQQQQQHHPSEVAPTRKELQDALPKIPPLSSFKTSRSKFVTMEEAELDF
HTFITAGLGRTVEVIREFRGRESGDETGYNEHVILQDDGAPALTQSSERLQSLSDSSSSD
VGVRPEGSHETTVAEQKTVFKHVAGSASTVPKSSAARVYEQETCTTNPRAPSQPERNESV
RRKQASQNTPGQNCREKSAKIKDSRKLPEKIKREPKRETDEEECMEAEEDWSSEAYWKAC
YEAWSDYYSAMSAFPEQGYQSYYSVAHNWMAAYRMNAIYMQELMKH
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccatgaggagagcagctcacgacatagaaacgcgaaagaggaccgaagat
gtgcttttggcggaggggattgacttcggctctctgctgttgtctcaggccgtgctggac
ggactgtcctccgcagggtttcagaaaccgtccccgatccagctcaaggcgatcccgctg
ggccgctgcggactcgatttgattgtacaagccaagtctgggacaggaaagacatgcgtg
ttcgtcaccatcgccctagagtctctaatcttggagaatccctccactcaggttctcgtt
ttggctccgacacgtgagatcgccgtgcagatccactcggtggtgatggccatcggctgc
gccatggagggcctggagtgtcatgttttcatcgggggccggcctgtgagccaagacaaa
gcccatctgaagaagtgtcacgtcgccgtgggctcccctggtcgcattaagcagctgatt
gagctgggcatgttgtccaccggcagtgtcaggctgtttgtcctggacgaggcagacaag
ctgctggaggagggcagcttccaggagcagataaactggatcttctcatccctgcctgtc
aacaagcaaatgcttgcactctctgccacctacccagaatcccttgctcaacaccttacc
cgctacatgaacgagcccacttttgttagactcaatccgagcgacatgggcctgaaaggt
ctgaagcagtattacaagctgctccagtcccatccactgcctcacaaagtctttgaggag
aaggtgcagcacctactcgagctgttcagtaaaatcccatttaaccaagccttggtgttt
tctaacctccacaccagggctcagcacctggcagacatcctgtcctccaaaggcttacct
gcagtttgtatttcaggtggtttgagtcaggaacagaggcttgaggcgatgtccaagctg
aagcagtatcagtgcagagttctcatctccaccgacctgacttccaggggaatagatgca
gagaaagtgaacctggtgatcaacctagatgtgccacaagactgggaaacctacatgcac
cgaatcggacgcgctgggcggtttggcactcaggggatggctgtgacctactgctgccac
ggggaagaggagaacaagatgatggccattgctcagaagtgtggcctcagtttgtctgct
ttaccttccgtcttggagcctggtttgatggatgagccatgcgactgggacgtgtgcgcc
gacgctgccgctccagacacgatcttgccgctgatttccagaactgtaaagaaaaagcgt
acaaaggtcggagtcccagcgtctgacgtcaccaagaataaagctgtagagtccagcaat
cagaggccagataaagcccaaacagcaactctgatgccacagcatgaagaagaaagtgaa
aggcaggtgacttctaccggggtgaagagtctgcagcagcagcagcagcagcatcatcct
tctgaagtggcgccaactcggaaagagctacaagacgccctgccgaagatcccgccccta
agctcattcaagaccagccggtcaaagtttgtgacgatggaggaggctgagctggacttc
cacaccttcatcactgcaggtttggggaggacagtggaggtcatcagggagttcagaggc
agagagtctggtgatgagactggctacaatgagcatgtcatactgcaggacgacggggcc
ccagctttgacccaaagcagtgaacggttacagtcactttctgattcctccagctcagat
gttggtgtcagacccgaaggttcgcatgagaccacagtagctgagcaaaagacagttttt
aagcatgtggctggatctgcatctaccgtgcccaaatcctctgcagccagagtctatgag
caggaaacctgcacaacaaacccgagagctccatctcagcctgagaggaacgagtctgta
agaaggaagcaagccagtcagaacacaccagggcagaattgtagggagaagtccgcaaaa
ataaaagacagcagaaagttgccggagaagattaaaagagagccgaagagggagactgat
gaagaggagtgcatggaggctgaggaggactggagctctgaggcgtactggaaagcctgc
tatgaagcctggagcgactactactctgctatgtccgcttttccagagcagggctaccag
agctactacagcgtagctcacaactggatggccgcgtatcgcatgaatgccatctacatg
caggaactcatgaaacactaa
DBGET
integrated database retrieval system
