Xiphophorus maculatus (southern platyfish): 102220036
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Entry
102220036 CDS
T02923
Name
(RefSeq) protocadherin-18-like isoform X1
KO
K16499
protocadherin delta 2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xma04515
]
102220036
Cell adhesion molecules [BR:
xma04515
]
Cadherins
Protocadherins
102220036
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
G1_gp67_N
GNVR
Psg1
Motif
Other DBs
NCBI-GeneID:
102220036
NCBI-ProteinID:
XP_005811614
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Position
5:18456907..18465010
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AA seq
1183 aa
AA seq
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MTGLFLTRMLRVATVFVLAAQHITGKTLKYQIFEEQKVGTVIARLRDDVADVLAKLPSSV
SLRFRAMQRGSSSFLTVREQDGEISIRTKIDREKLCEKNLNCSIQFDVLTLPTEHLQLFH
VEVEVLDINDNAPHFARALIPIEISESAAIGARIPLDSATDPDVGENSLYTYALEPNNNF
RIDVQSRSDGVKYAELVVLRELDREVRSSYELQYTASDRGVPPRTGSTLLRISIADSNDN
SPIFEKSSYVLNLPENSPVGTLLIDLNATDADDGTNAKIAYSFSNHVSPKIIETFKINTD
SGHLTLIKRVDYETVNSYDIDVQAQDMGPNSMPAHCKILVKVVDVNDNKPDISINFPSQG
NGDAAYVSEASPLDTFVALVRVEDLDSGLNGEVECKLHGQGYFKLQKTYENNYMILTNVS
LDREKRSEFSLTVVAEDRGTPSLSTVKHFTVHVTDENDNPPRFEKGRYEISKSENNAPGA
YLTSITATDPDLDANGQVSYAILENFIHGSSISTYVTIDPSNGAIYALRTFDREEVNNIS
FVVQAKDAGKPPLTSNSTVVLNILDENDNPPVIVVPQLWNFSADVRASKFTEAGRLVTVV
RATDRDTGVNAELICSIVSGNEEGYFVIEPRTCKIQANTSLENFPHEHAELTVLVRDQGT
ESLSAKAVLKINLHENMKNHVQPVDQGGSPIKRSKMIIIILGVIVGKLLVIMVAFVTRYN
REKKEARHSYNCRVAESTHQHHPKKPSRQIHKGDITLVPTVNGTLPIRAHHRSPSTTPPM
DRAQMGVPQNHHSRQSLNSLVTISSNHIPESFALEMAHATPPVEQVSQLLSMLHQGQYQP
RPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDCEMGRESPVDRLLLGEGFSDL
MHLEMHHRLHPATRLCTDECRILGHSDQCWMPPVSSPASSADYRNNMYIPGEESSQPPQL
DDDESSVDSENRKSFSTFGKESGNEELDLSGGGGGGEGDAAGGGAGSLLTEMNSVFQRLL
PPNIDSYTECTETSPPSSSSTTERASSRGGNIAGNYSNNAVPQDSRRGLLPGGKGPAYPP
GVAAWAANTHYLNPGNTSVVNNHVSSSPSSCSSSTSTNGQPPHLKWLPAMEEIPENYEED
DFDGVFHQGHQSSKRRDSRHEAGIDTSELAQEINKLLQDVRQN
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgacgggactctttttaacaagaatgctgagagttgccacggtttttgtgctggcggcg
cagcacattaccggcaagacgctgaaatatcagatcttcgaggagcagaaggttggcact
gtaatcgcccgcttgagagacgacgtcgcggatgttttggcaaaacttcccagctcggtg
tctttgcgcttcagagcgatgcaacgggggagctcctctttccttactgtgcgtgagcag
gacggagagatcagcatcaggaccaaaatcgaccgcgagaaactctgcgagaagaatctt
aactgttccatccagttcgacgtcctgacgctccccaccgagcacctccagttgtttcac
gtcgaagtggaagtgctggacattaacgacaacgcgccgcatttcgcccgagccctaatc
cccatcgagatctcagaaagtgcggccattggagcgcgcatccccctggacagcgccaca
gaccccgatgtcggtgagaattccttatacacttacgcactagagccaaataacaacttc
aggatagacgtgcaatctaggagcgacggagttaagtatgccgagctggtggtacttagg
gagctggaccgggaggtgcgctccagctacgaacttcagtacacagcctctgacaggggc
gttcccccaagaacaggatcgacccttctcagaatcagcatcgctgactctaatgacaac
agtccgatttttgagaagtcctcctatgttttaaatctccctgaaaactcacctgttggc
actctgcttattgatctgaacgccacggacgcggatgacggcacaaatgctaaaatcgca
tactcatttagcaatcacgtgtctcctaaaattatagagacgttcaaaattaacaccgac
agcggtcacctgaccctcatcaagcgtgttgactatgagacagtaaattcttatgacatt
gacgtgcaagctcaagacatgggtccaaactccatgcctgctcactgcaagatcttggtc
aaagtggtagatgtgaatgataacaaaccagacatcagtattaattttccctctcagggg
aatggagatgcagcttatgtgtctgaggcatctccgctggacacatttgttgctttggta
agagtggaagacttggactctgggttaaatggagaagtggagtgtaaacttcatggtcaa
ggttatttcaaactgcagaaaacctatgagaacaactatatgatcttgaccaatgtgtcc
ctggacagagaaaagaggtcagagttcagcctgactgttgtggctgaggacagggggacc
ccgagtctctccacagtcaaacacttcacagtgcatgttacagacgaaaatgacaacccg
ccacgctttgagaagggacgatatgagatctccaaatcggaaaacaatgcccctggagcg
tacctgacatctatcacagccactgaccctgacttggatgcaaatggacaggtgagctac
gccatcttggaaaacttcattcatggaagttccatttccacttacgtcactatagacccc
tctaacggtgccatctatgctctgcgcacatttgaccgggaggaggtgaataatatatcc
ttcgttgtgcaagccaaagacgcaggtaaacctccacttaccagcaactctactgttgtt
ctgaacattctggatgaaaatgataaccccccagtcattgtggttccacagttgtggaat
ttttcagcagacgttcgtgcttcaaagttcacagaggctggacgtttagtgacggtggtc
agagcgacagatcgtgacacaggagtcaatgctgagctcatctgctctattgtcagtggc
aatgaagaagggtactttgttattgagccaagaacatgcaagatccaagccaacaccagc
ctagagaacttcccacatgagcatgctgagcttactgtgttggtcagagatcagggaact
gagagtcttagtgccaaggcagttctaaaaatcaacctccatgagaacatgaaaaaccat
gtgcagccagtggaccaggggggttctccaatcaaaagatccaaaatgatcatcatcata
ttgggagtaatcgttggcaagctcctggtcatcatggtggcctttgtcacccgctataac
agggaaaagaaagaggcgagacactcttacaactgccgggtggctgagtccacccaccag
caccacccaaagaaaccttcacgccaaattcacaaaggtgacatcaccctggtgcccaca
gtgaacggcaccctccccatcagggcccaccaccgctcaccatcaaccacacctccaatg
gaccgggcccagatgggggttccacagaaccatcacagccgccaatctcttaatagcctg
gtgaccatctcgtccaatcacatcccggagagctttgccctggaaatggcacacgcaact
ccaccagtggagcaagtctcacagcttctgtccatgctccatcagggccagtaccagccc
agacccagtttccgtggcaacaaatactcccgcagctacaggtacgcattacaggacatg
gacaagttcagcctgaaggacagtggccgtggggacagtgaggcgggggacagtgactgc
gaaatggggcgggaatcccccgtggacaggctgctgctgggggaggggttttctgaccta
atgcacctcgaaatgcaccaccgactccacccagctacgagactgtgcacggatgaatgc
cgcatcttgggacactctgaccaatgctggatgccccccgtctcctcacctgcatcatcc
gcagactaccgaaacaacatgtacatccccggggaagagtcctcccagccaccccagcta
gatgatgatgagtcttcggtggactcagagaatcgcaagagtttctccacatttggcaag
gagtctgggaatgaagagctagatctcagtggaggaggaggagggggagaaggcgatgca
gctgggggaggagctggatccctcctcacagagatgaactctgtattccagcgactccta
ccccccaacatagactcatacactgagtgcactgaaacaagcccaccctcatcctcatca
acaacagagagggcaagcagtcgtggtggcaacattgcaggtaactacagtaacaacgct
gttcctcaagacagccgtagaggtttgctccccggtggtaagggtccggcttaccctcct
ggtgtagctgcatgggctgctaatacacactatttaaatccagggaacacatctgtggtg
aacaaccatgtttcctcctctccctcttcctgttcatcctccacctccacaaatggacaa
ccaccacacctgaaatggctgccagccatggaggaaatcccagagaattacgaagaggat
gactttgatggtgtcttccatcagggtcaccaaagcagcaagcgcagggacagtcgccat
gaggccggcattgatactagcgagctggcccaggagatcaacaaactgctgcaggatgtc
agacagaactga
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